Papaleo E - Search Results

1

PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles.

Sora V, Tiberti M, Beltrame L, Dogan D, Robbani SM, Rubin J, Papaleo E. Sora V, et al. Among authors: papaleo e. J Chem Inf Model. 2023 Jul 24;63(14):4237-4245. doi: 10.1021/acs.jcim.3c00574. Epub 2023 Jul 12. J Chem Inf Model. 2023. PMID: 37437128

2

Dynamic properties of extremophilic subtilisin-like serine-proteases.

Tiberti M, Papaleo E. Tiberti M, et al. Among authors: papaleo e. J Struct Biol. 2011 Apr;174(1):69-83. doi: 10.1016/j.jsb.2011.01.006. Epub 2011 Jan 27. J Struct Biol. 2011. PMID: 21276854

3

Molecular determinants of enzyme cold adaptation: comparative structural and computational studies of cold- and warm-adapted enzymes.

Papaleo E, Tiberti M, Invernizzi G, Pasi M, Ranzani V. Papaleo E, et al. Curr Protein Pept Sci. 2011 Nov;12(7):657-83. doi: 10.2174/1389203711109070657. Curr Protein Pept Sci. 2011. PMID: 21827423 Review.

4

Molecular dynamics of mesophilic-like mutants of a cold-adapted enzyme: insights into distal effects induced by the mutations.

Papaleo E, Pasi M, Tiberti M, De Gioia L. Papaleo E, et al. PLoS One. 2011;6(9):e24214. doi: 10.1371/journal.pone.0024214. Epub 2011 Sep 7. PLoS One. 2011. PMID: 21915299 Free PMC article.

5

Mechanisms of intramolecular communication in a hyperthermophilic acylaminoacyl peptidase: a molecular dynamics investigation.

Papaleo E, Renzetti G, Tiberti M. Papaleo E, et al. PLoS One. 2012;7(4):e35686. doi: 10.1371/journal.pone.0035686. Epub 2012 Apr 27. PLoS One. 2012. PMID: 22558199 Free PMC article.

6

xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.

Pasi M, Tiberti M, Arrigoni A, Papaleo E. Pasi M, et al. Among authors: papaleo e. J Chem Inf Model. 2012 Jul 23;52(7):1865-74. doi: 10.1021/ci300213c. Epub 2012 Jul 5. J Chem Inf Model. 2012. PMID: 22721491

7

PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins.

Tiberti M, Invernizzi G, Lambrughi M, Inbar Y, Schreiber G, Papaleo E. Tiberti M, et al. Among authors: papaleo e. J Chem Inf Model. 2014 May 27;54(5):1537-51. doi: 10.1021/ci400639r. Epub 2014 Apr 17. J Chem Inf Model. 2014. PMID: 24702124

8

Communication routes in ARID domains between distal residues in helix 5 and the DNA-binding loops.

Invernizzi G, Tiberti M, Lambrughi M, Lindorff-Larsen K, Papaleo E. Invernizzi G, et al. Among authors: papaleo e. PLoS Comput Biol. 2014 Sep 4;10(9):e1003744. doi: 10.1371/journal.pcbi.1003744. eCollection 2014 Sep. PLoS Comput Biol. 2014. PMID: 25187961 Free PMC article.

9

E2 superfamily of ubiquitin-conjugating enzymes: constitutively active or activated through phosphorylation in the catalytic cleft.

Valimberti I, Tiberti M, Lambrughi M, Sarcevic B, Papaleo E. Valimberti I, et al. Among authors: papaleo e. Sci Rep. 2015 Oct 14;5:14849. doi: 10.1038/srep14849. Sci Rep. 2015. PMID: 26463729 Free PMC article.

10

ENCORE: Software for Quantitative Ensemble Comparison.

Tiberti M, Papaleo E, Bengtsen T, Boomsma W, Lindorff-Larsen K. Tiberti M, et al. Among authors: papaleo e. PLoS Comput Biol. 2015 Oct 27;11(10):e1004415. doi: 10.1371/journal.pcbi.1004415. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26505632 Free PMC article.

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