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LIANA+ provides an all-in-one framework for cell-cell communication inference.
Dimitrov D, Schäfer PSL, Farr E, Rodriguez-Mier P, Lobentanzer S, Badia-I-Mompel P, Dugourd A, Tanevski J, Ramirez Flores RO, Saez-Rodriguez J. Dimitrov D, et al. Among authors: lobentanzer s. Nat Cell Biol. 2024 Sep;26(9):1613-1622. doi: 10.1038/s41556-024-01469-w. Epub 2024 Sep 2. Nat Cell Biol. 2024. PMID: 39223377 Free PMC article.
Molecular causality in the advent of foundation models.
Lobentanzer S, Rodriguez-Mier P, Bauer S, Saez-Rodriguez J. Lobentanzer S, et al. Mol Syst Biol. 2024 Aug;20(8):848-858. doi: 10.1038/s44320-024-00041-w. Epub 2024 Jun 18. Mol Syst Biol. 2024. PMID: 38890548 Free PMC article. Review.
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pastrello C, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang RS, Zolotareva O, Baumbach J. Maier A, et al. Among authors: lobentanzer s. Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388. Nucleic Acids Res. 2024. PMID: 38783119 Free PMC article.
Democratizing knowledge representation with BioCypher.
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P, Danhauser K, Doğan T, Dreo J, Dunham I, Farr E, Fernandez-Torras A, Gyori BM, Hartung M, Hoyt CT, Klein C, Korcsmaros T, Maier A, Mann M, Ochoa D, Pareja-Lorente E, Popp F, Preusse M, Probul N, Schwikowski B, Sen B, Strauss MT, Turei D, Ulusoy E, Waltemath D, Wodke JAH, Saez-Rodriguez J. Lobentanzer S, et al. Nat Biotechnol. 2023 Aug;41(8):1056-1059. doi: 10.1038/s41587-023-01848-y. Nat Biotechnol. 2023. PMID: 37337100 No abstract available.
Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang R, Zolotareva O, Baumbach J. Maier A, et al. Among authors: lobentanzer s. ArXiv [Preprint]. 2023 Jul 4:arXiv:2305.15453v2. ArXiv. 2023. Update in: Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388. PMID: 37332567 Free PMC article. Updated. Preprint.
What's in a Badge? A Computational Reproducibility Investigation of the Open Data Badge Policy in One Issue of Psychological Science.
Crüwell S, Apthorp D, Baker BJ, Colling L, Elson M, Geiger SJ, Lobentanzer S, Monéger J, Patterson A, Schwarzkopf DS, Zaneva M, Brown NJL. Crüwell S, et al. Among authors: lobentanzer s. Psychol Sci. 2023 Apr;34(4):512-522. doi: 10.1177/09567976221140828. Epub 2023 Feb 2. Psychol Sci. 2023. PMID: 36730433 Free article.
14 results