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Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang R, Zolotareva O, Baumbach J. Maier A, et al. Among authors: lazareva o. ArXiv [Preprint]. 2023 Jul 4:arXiv:2305.15453v2. ArXiv. 2023. Update in: Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388. PMID: 37332567 Free PMC article. Updated. Preprint.
SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype.
Bongiovanni D, Klug M, Lazareva O, Weidlich S, Biasi M, Ursu S, Warth S, Buske C, Lukas M, Spinner CD, Scheidt MV, Condorelli G, Baumbach J, Laugwitz KL, List M, Bernlochner I. Bongiovanni D, et al. Among authors: lazareva o. Cell Death Dis. 2021 Jan 5;12(1):50. doi: 10.1038/s41419-020-03333-9. Cell Death Dis. 2021. PMID: 33414384 Free PMC article.
On the limits of active module identification.
Lazareva O, Baumbach J, List M, Blumenthal DB. Lazareva O, et al. Brief Bioinform. 2021 Sep 2;22(5):bbab066. doi: 10.1093/bib/bbab066. Brief Bioinform. 2021. PMID: 33782690
Platelet Surface Protein Expression and Reactivity upon TRAP Stimulation after BNT162b2 Vaccination.
Klug M, Lazareva O, Kirmes K, Rosenbaum M, Lukas M, Weidlich S, Spinner CD, von Scheidt M, Gosetti R, Baumbach J, Ruland J, Condorelli G, Laugwitz KL, List M, Bernlochner I, Bongiovanni D. Klug M, et al. Among authors: lazareva o. Thromb Haemost. 2022 Oct;122(10):1706-1711. doi: 10.1055/s-0041-1733934. Epub 2021 Aug 13. Thromb Haemost. 2022. PMID: 34388849
The AIMe registry for artificial intelligence in biomedical research.
Matschinske J, Alcaraz N, Benis A, Golebiewski M, Grimm DG, Heumos L, Kacprowski T, Lazareva O, List M, Louadi Z, Pauling JK, Pfeifer N, Röttger R, Schwämmle V, Sturm G, Traverso A, Van Steen K, de Freitas MV, Villalba Silva GC, Wee L, Wenke NK, Zanin M, Zolotareva O, Baumbach J, Blumenthal DB. Matschinske J, et al. Among authors: lazareva o. Nat Methods. 2021 Oct;18(10):1128-1131. doi: 10.1038/s41592-021-01241-0. Nat Methods. 2021. PMID: 34433960 Free article. No abstract available.
Network medicine for disease module identification and drug repurposing with the NeDRex platform.
Sadegh S, Skelton J, Anastasi E, Bernett J, Blumenthal DB, Galindez G, Salgado-Albarrán M, Lazareva O, Flanagan K, Cockell S, Nogales C, Casas AI, Schmidt HHHW, Baumbach J, Wipat A, Kacprowski T. Sadegh S, et al. Among authors: lazareva o. Nat Commun. 2021 Nov 25;12(1):6848. doi: 10.1038/s41467-021-27138-2. Nat Commun. 2021. PMID: 34824199 Free PMC article.
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors.
Hoffmann M, Trummer N, Schwartz L, Jankowski J, Lee HK, Willruth LL, Lazareva O, Yuan K, Baumgarten N, Schmidt F, Baumbach J, Schulz MH, Blumenthal DB, Hennighausen L, List M. Hoffmann M, et al. Among authors: lazareva o. Gigascience. 2022 Dec 28;12:giad026. doi: 10.1093/gigascience/giad026. Epub 2023 May 3. Gigascience. 2022. PMID: 37132521 Free PMC article.
78 results