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Page 1
brainlife.io: A decentralized and open source cloud platform to support neuroscience research.
Hayashi S, Caron BA, Heinsfeld AS, Vinci-Booher S, McPherson B, Bullock DN, Bertò G, Niso G, Hanekamp S, Levitas D, Ray K, MacKenzie A, Kitchell L, Leong JK, Nascimento-Silva F, Koudoro S, Willis H, Jolly JK, Pisner D, Zuidema TR, Kurzawski JW, Mikellidou K, Bussalb A, Rorden C, Victory C, Bhatia D, Baran Aydogan D, Yeh FF, Delogu F, Guaje J, Veraart J, Bollman S, Stewart A, Fischer J, Faskowitz J, Chaumon M, Fabrega R, Hunt D, McKee S, Brown ST, Heyman S, Iacovella V, Mejia AF, Marinazzo D, Craddock RC, Olivetti E, Hanson JL, Avesani P, Garyfallidis E, Stanzione D, Carson J, Henschel R, Hancock DY, Stewart CA, Schnyer D, Eke DO, Poldrack RA, George N, Bridge H, Sani I, Freiwald WA, Puce A, Port NL, Pestilli F. Hayashi S, et al. Among authors: pestilli f. ArXiv [Preprint]. 2023 Aug 11:arXiv:2306.02183v3. ArXiv. 2023. Update in: Nat Methods. 2024 May;21(5):809-813. doi: 10.1038/s41592-024-02237-2. PMID: 37332566 Free PMC article. Updated. Preprint.
A labeled Clinical-MRI dataset of Nigerian brains.
Wogu E, Filima P, Caron B, Levitas D, Herholz P, Leal C, Mehboob MF, Hayashi S, Akintoye S, Ogoh G, Godwin T, Eke D, Pestilli F. Wogu E, et al. Among authors: pestilli f. ArXiv [Preprint]. 2023 Nov 8:arXiv:2311.04425v1. ArXiv. 2023. PMID: 37986723 Free PMC article. Preprint.
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).
Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thi… See abstract for full author list ➔ Poldrack RA, et al. Among authors: pestilli f. ArXiv [Preprint]. 2024 Jan 9:arXiv:2309.05768v2. ArXiv. 2024. Update in: Imaging Neurosci (Camb). 2024 Mar 08;2:1-19. doi: 10.1162/imag_a_00103. PMID: 37744469 Free PMC article. Updated. Preprint.
Diffusion tensor analysis of white matter tracts is prognostic of persisting post-concussion symptoms in collegiate athletes.
Bertò G, Rooks LT, Broglio SP, McAllister TA, McCrea MA, Pasquina PF, Giza C, Brooks A, Mihalik J, Guskiewicz K, Goldman J, Duma S, Rowson S, Port NL, Pestilli F. Bertò G, et al. Among authors: pestilli f. Neuroimage Clin. 2024;43:103646. doi: 10.1016/j.nicl.2024.103646. Epub 2024 Jul 25. Neuroimage Clin. 2024. PMID: 39106542 Free PMC article.
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.
Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Dörig M, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Halchenko YO, Hannan AJ, Heinsfeld AS, Huber L, Hughes ME, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Meier ML, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira MM, Shaw TB, Sowman PF, Spitz G, Stewart AW, Ye X, Zhu JD, Narayanan A, Bollmann S. Renton AI, et al. Among authors: pestilli f. Nat Methods. 2024 May;21(5):804-808. doi: 10.1038/s41592-023-02145-x. Epub 2024 Jan 8. Nat Methods. 2024. PMID: 38191935 Free PMC article.
Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging.
Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Hannan AJ, Huber R, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira M, Shaw TB, Sowman PF, Spitz G, Stewart A, Ye X, Zhu JD, Hughes ME, Narayanan A, Bollmann S. Renton AI, et al. Among authors: pestilli f. Res Sq [Preprint]. 2023 Mar 13:rs.3.rs-2649734. doi: 10.21203/rs.3.rs-2649734/v1. Res Sq. 2023. Update in: Nat Methods. 2024 May;21(5):804-808. doi: 10.1038/s41592-023-02145-x. PMID: 36993557 Free PMC article. Updated. Preprint.
The past, present, and future of the brain imaging data structure (BIDS).
Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thi… See abstract for full author list ➔ Poldrack RA, et al. Among authors: pestilli f. Imaging Neurosci (Camb). 2024 Mar 8;2:1-19. doi: 10.1162/imag_a_00103. eCollection 2024 Mar 1. Imaging Neurosci (Camb). 2024. PMID: 39308505 Free PMC article. Review.
The status of MRI databases across the world focused on psychiatric and neurological disorders.
Tanaka SC, Kasai K, Okamoto Y, Koike S, Hayashi T, Yamashita A, Yamashita O, Johnstone T, Pestilli F, Doya K, Okada G, Shinzato H, Itai E, Takahara Y, Takamiya A, Nakamura M, Itahashi T, Aoki R, Koizumi Y, Shimizu M, Miyata J, Son S, Aki M, Okada N, Morita S, Sawamoto N, Abe M, Oi Y, Sajima K, Kamagata K, Hirose M, Aoshima Y, Hamatani S, Nohara N, Funaba M, Noda T, Inoue K, Hirano J, Mimura M, Takahashi H, Hattori N, Sekiguchi A, Kawato M, Hanakawa T. Tanaka SC, et al. Among authors: pestilli f. Psychiatry Clin Neurosci. 2024 Oct;78(10):563-579. doi: 10.1111/pcn.13717. Epub 2024 Aug 20. Psychiatry Clin Neurosci. 2024. PMID: 39162256 Review.
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