Kaminski N - Search Results

1

Emergence of division of labor in tissues through cell interactions and spatial cues.

Adler M, Moriel N, Goeva A, Avraham-Davidi I, Mages S, Adams TS, Kaminski N, Macosko EZ, Regev A, Medzhitov R, Nitzan M. Adler M, et al. Among authors: kaminski n. Cell Rep. 2023 May 30;42(5):112412. doi: 10.1016/j.celrep.2023.112412. Epub 2023 Apr 21. Cell Rep. 2023. PMID: 37086403 Free PMC article.

2

Lung Cell Atlases in Health and Disease.

Adams TS, Marlier A, Kaminski N. Adams TS, et al. Among authors: kaminski n. Annu Rev Physiol. 2023 Feb 10;85:47-69. doi: 10.1146/annurev-physiol-032922-082826. Epub 2022 Nov 9. Annu Rev Physiol. 2023. PMID: 36351366 Free article. Review.

3

PD-1^highCXCR5^-CD4⁺ peripheral helper T cells promote CXCR3⁺ plasmablasts in human acute viral infection.

Asashima H, Mohanty S, Comi M, Ruff WE, Hoehn KB, Wong P, Klein J, Lucas C, Cohen I, Coffey S, Lele N, Greta L, Raddassi K, Chaudhary O, Unterman A, Emu B, Kleinstein SH, Montgomery RR, Iwasaki A, Dela Cruz CS, Kaminski N, Shaw AC, Hafler DA, Sumida TS. Asashima H, et al. Among authors: kaminski n. Cell Rep. 2023 Jan 31;42(1):111895. doi: 10.1016/j.celrep.2022.111895. Epub 2023 Jan 2. Cell Rep. 2023. PMID: 36596303 Free PMC article.

4

iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.

Liu Y, Zhao J, Adams TS, Wang N, Schupp JC, Wu W, McDonough JE, Chupp GL, Kaminski N, Wang Z, Yan X. Liu Y, et al. Among authors: kaminski n. BMC Bioinformatics. 2023 Aug 22;24(1):318. doi: 10.1186/s12859-023-05432-8. BMC Bioinformatics. 2023. PMID: 37608264 Free PMC article.

5

Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.

Liu Y, Zhao J, Adams TS, Wang N, Schupp JC, Wu W, McDonough JE, Chupp GL, Kaminski N, Wang Z, Yan X. Liu Y, et al. Among authors: kaminski n. BMC Bioinformatics. 2023 Oct 19;24(1):394. doi: 10.1186/s12859-023-05523-6. BMC Bioinformatics. 2023. PMID: 37858060 Free PMC article. No abstract available.

6

Circulating Mitochondrial DNA Is Associated With High Levels of Fatigue in Two Independent Sarcoidosis Cohorts.

Fiorini V, Hu B, Sun Y, Yu S, McGovern J, Gandhi S, Woo S, Turcotte-Foster SJ, Pivarnik T, Khan Z, Adams T, Herzog EL, Kaminski N, Gulati M, Ryu C. Fiorini V, et al. Among authors: kaminski n. Chest. 2024 May;165(5):1174-1185. doi: 10.1016/j.chest.2023.11.020. Epub 2023 Nov 15. Chest. 2024. PMID: 37977267

7

Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES.

Raredon MSB, Yang J, Kothapalli N, Lewis W, Kaminski N, Niklason LE, Kluger Y. Raredon MSB, et al. Among authors: kaminski n. Bioinformatics. 2023 Jan 1;39(1):btac775. doi: 10.1093/bioinformatics/btac775. Bioinformatics. 2023. PMID: 36458905 Free PMC article.

8

microRNA-33 deficiency in macrophages enhances autophagy, improves mitochondrial homeostasis, and protects against lung fibrosis.

Ahangari F, Price NL, Malik S, Chioccioli M, Bärnthaler T, Adams TS, Kim J, Pradeep SP, Ding S, Cosmos C Jr, Rose KS, McDonough JE, Aurelien NR, Ibarra G, Omote N, Schupp JC, DeIuliis G, Villalba Nunez JA, Sharma L, Ryu C, Dela Cruz CS, Liu X, Prasse A, Rosas I, Bahal R, Fernández-Hernando C, Kaminski N. Ahangari F, et al. Among authors: kaminski n. JCI Insight. 2023 Feb 22;8(4):e158100. doi: 10.1172/jci.insight.158100. JCI Insight. 2023. PMID: 36626225 Free PMC article.

9

A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.

Deng W, Li B, Wang J, Jiang W, Yan X, Li N, Vukmirovic M, Kaminski N, Wang J, Zhao H. Deng W, et al. Among authors: kaminski n. Brief Bioinform. 2023 Jan 19;24(1):bbac616. doi: 10.1093/bib/bbac616. Brief Bioinform. 2023. PMID: 36631398 Free PMC article.

10

Integrative genetic and genomic networks identify microRNA associated with COPD and ILD.

Pavel AB, Garrison C, Luo L, Liu G, Taub D, Xiao J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Geraci MW, Sciurba F, Schwartz DA, Kaminski N, Beane J, Spira A, Lenburg ME, Campbell JD. Pavel AB, et al. Among authors: kaminski n. Sci Rep. 2023 Aug 11;13(1):13076. doi: 10.1038/s41598-023-39751-w. Sci Rep. 2023. PMID: 37567908 Free PMC article.

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