Stoddard BL - Search Results

1

Structures, activity and mechanism of the Type IIS restriction endonuclease PaqCI.

Kennedy MA, Hosford CJ, Azumaya CM, Luyten YA, Chen M, Morgan RD, Stoddard BL. Kennedy MA, et al. Among authors: stoddard bl. Nucleic Acids Res. 2023 May 22;51(9):4467-4487. doi: 10.1093/nar/gkad228. Nucleic Acids Res. 2023. PMID: 36987874 Free PMC article.

2

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility.

Chevalier BS, Stoddard BL. Chevalier BS, et al. Among authors: stoddard bl. Nucleic Acids Res. 2001 Sep 15;29(18):3757-74. doi: 10.1093/nar/29.18.3757. Nucleic Acids Res. 2001. PMID: 11557808 Free PMC article. Review.

3

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.

Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SKh, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY. Roberts RJ, et al. Among authors: stoddard bl. Nucleic Acids Res. 2003 Apr 1;31(7):1805-12. doi: 10.1093/nar/gkg274. Nucleic Acids Res. 2003. PMID: 12654995 Free PMC article.

4

Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase.

Eastberg JH, Pelletier J, Stoddard BL. Eastberg JH, et al. Among authors: stoddard bl. Nucleic Acids Res. 2004 Jan 30;32(2):653-60. doi: 10.1093/nar/gkh212. Print 2004. Nucleic Acids Res. 2004. PMID: 14754987 Free PMC article.

5

Thermodynamics of DNA target site recognition by homing endonucleases.

Eastberg JH, McConnell Smith A, Zhao L, Ashworth J, Shen BW, Stoddard BL. Eastberg JH, et al. Among authors: stoddard bl. Nucleic Acids Res. 2007;35(21):7209-21. doi: 10.1093/nar/gkm867. Epub 2007 Oct 18. Nucleic Acids Res. 2007. PMID: 17947319 Free PMC article.

6

Optimization of in vivo activity of a bifunctional homing endonuclease and maturase reverses evolutionary degradation.

Takeuchi R, Certo M, Caprara MG, Scharenberg AM, Stoddard BL. Takeuchi R, et al. Among authors: stoddard bl. Nucleic Acids Res. 2009 Feb;37(3):877-90. doi: 10.1093/nar/gkn1007. Epub 2008 Dec 22. Nucleic Acids Res. 2009. PMID: 19103658 Free PMC article.

7

Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI.

Shen BW, Heiter DF, Chan SH, Wang H, Xu SY, Morgan RD, Wilson GG, Stoddard BL. Shen BW, et al. Among authors: stoddard bl. Structure. 2010 Jun 9;18(6):734-43. doi: 10.1016/j.str.2010.03.009. Structure. 2010. PMID: 20541511 Free PMC article.

8

Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity.

Chan SH, Stoddard BL, Xu SY. Chan SH, et al. Among authors: stoddard bl. Nucleic Acids Res. 2011 Jan;39(1):1-18. doi: 10.1093/nar/gkq742. Epub 2010 Aug 30. Nucleic Acids Res. 2011. PMID: 20805246 Free PMC article. Review.

9

Single-strand nicks induce homologous recombination with less toxicity than double-strand breaks using an AAV vector template.

Metzger MJ, McConnell-Smith A, Stoddard BL, Miller AD. Metzger MJ, et al. Among authors: stoddard bl. Nucleic Acids Res. 2011 Feb;39(3):926-35. doi: 10.1093/nar/gkq826. Epub 2010 Sep 28. Nucleic Acids Res. 2011. PMID: 20876694 Free PMC article.

10

Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI.

Shen BW, Xu D, Chan SH, Zheng Y, Zhu Z, Xu SY, Stoddard BL. Shen BW, et al. Among authors: stoddard bl. Nucleic Acids Res. 2011 Oct;39(18):8223-36. doi: 10.1093/nar/gkr543. Epub 2011 Jun 30. Nucleic Acids Res. 2011. PMID: 21724614 Free PMC article.

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