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RNA splicing analysis using heterogeneous and large RNA-seq datasets.
Vaquero-Garcia J, Aicher JK, Jewell S, Gazzara MR, Radens CM, Jha A, Norton SS, Lahens NF, Grant GR, Barash Y. Vaquero-Garcia J, et al. Among authors: grant gr. Nat Commun. 2023 Mar 3;14(1):1230. doi: 10.1038/s41467-023-36585-y. Nat Commun. 2023. PMID: 36869033 Free PMC article.
Systematic evaluation of spliced alignment programs for RNA-seq data.
Engström PG, Steijger T, Sipos B, Grant GR, Kahles A, Rätsch G, Goldman N, Hubbard TJ, Harrow J, Guigó R, Bertone P; RGASP Consortium. Engström PG, et al. Among authors: grant gr. Nat Methods. 2013 Dec;10(12):1185-91. doi: 10.1038/nmeth.2722. Epub 2013 Nov 3. Nat Methods. 2013. PMID: 24185836 Free PMC article.
Differential Impact In Vivo of Pf4-ΔCre-Mediated and Gp1ba-ΔCre-Mediated Depletion of Cyclooxygenase-1 in Platelets in Mice.
Tang SY, Lordan R, Meng H, Auerbach BJ, Hennessy EJ, Sengupta A, Das US, Joshi R, Marcos-Contreras OA, McConnell R, Grant GR, Ricciotti E, Muzykantov VR, Grosser T, Weiljie AM, FitzGerald GA. Tang SY, et al. Among authors: grant gr. Arterioscler Thromb Vasc Biol. 2024 Jun;44(6):1393-1406. doi: 10.1161/ATVBAHA.123.320295. Epub 2024 Apr 25. Arterioscler Thromb Vasc Biol. 2024. PMID: 38660804
BEERS2: RNA-Seq simulation through high fidelity in silico modeling.
Brooks TG, Lahens NF, Mrčela A, Sarantopoulou D, Nayak S, Naik A, Sengupta S, Choi PS, Grant GR. Brooks TG, et al. Among authors: grant gr. Brief Bioinform. 2024 Mar 27;25(3):bbae164. doi: 10.1093/bib/bbae164. Brief Bioinform. 2024. PMID: 38605641 Free PMC article.
Circadian regulation of lung repair and regeneration.
Naik A, Forrest KM, Paul O, Issah Y, Valekunja UK, Tang SY, Reddy AB, Hennessy EJ, Brooks TG, Chaudhry F, Babu A, Morley M, Zepp JA, Grant GR, FitzGerald GA, Sehgal A, Worthen GS, Frank DB, Morrisey EE, Sengupta S. Naik A, et al. Among authors: grant gr. JCI Insight. 2024 Mar 8;9(5):e179745. doi: 10.1172/jci.insight.179745. JCI Insight. 2024. PMID: 38456509 Free PMC article. No abstract available.
103 results