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RNA splicing analysis using heterogeneous and large RNA-seq datasets.
Vaquero-Garcia J, Aicher JK, Jewell S, Gazzara MR, Radens CM, Jha A, Norton SS, Lahens NF, Grant GR, Barash Y. Vaquero-Garcia J, et al. Among authors: barash y. Nat Commun. 2023 Mar 3;14(1):1230. doi: 10.1038/s41467-023-36585-y. Nat Commun. 2023. PMID: 36869033 Free PMC article.
Functional coordination of alternative splicing in the mammalian central nervous system.
Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ. Fagnani M, et al. Among authors: barash y. Genome Biol. 2007;8(6):R108. doi: 10.1186/gb-2007-8-6-r108. Genome Biol. 2007. PMID: 17565696 Free PMC article.
Alternative splicing of its 5'-UTR limits CD20 mRNA translation and enables resistance to CD20-directed immunotherapies.
Ang Z, Paruzzo L, Hayer KE, Schmidt C, Torres Diz M, Xu F, Zankharia U, Zhang Y, Soldan S, Zheng S, Falkenstein CD, Loftus JP, Yang SY, Asnani M, King Sainos P, Pillai V, Chong E, Li MM, Tasian SK, Barash Y, Lieberman PM, Ruella M, Schuster SJ, Thomas-Tikhonenko A. Ang Z, et al. Among authors: barash y. bioRxiv [Preprint]. 2023 Aug 16:2023.02.19.529123. doi: 10.1101/2023.02.19.529123. bioRxiv. 2023. Update in: Blood. 2023 Nov 16;142(20):1724-1739. doi: 10.1182/blood.2023020400 PMID: 37645778 Free PMC article. Updated. Preprint.
An illuminated view of molecular biology.
Barash Y, Wang X. Barash Y, et al. Genome Biol. 2010;11(8):307. doi: 10.1186/gb-2010-11-8-307. Epub 2010 Aug 26. Genome Biol. 2010. PMID: 20804575 Free PMC article.
Deciphering the splicing code.
Barash Y, Calarco JA, Gao W, Pan Q, Wang X, Shai O, Blencowe BJ, Frey BJ. Barash Y, et al. Nature. 2010 May 6;465(7294):53-9. doi: 10.1038/nature09000. Nature. 2010. PMID: 20445623
Splicing code modeling.
Barash Y, Vaquero-Garcia J. Barash Y, et al. Adv Exp Med Biol. 2014;825:451-66. doi: 10.1007/978-1-4939-1221-6_13. Adv Exp Med Biol. 2014. PMID: 25201114 Review.
164 results