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The Gene Ontology knowledgebase in 2023.
Gene Ontology Consortium; Aleksander SA, Balhoff J, Carbon S, Cherry JM, Drabkin HJ, Ebert D, Feuermann M, Gaudet P, Harris NL, Hill DP, Lee R, Mi H, Moxon S, Mungall CJ, Muruganugan A, Mushayahama T, Sternberg PW, Thomas PD, Van Auken K, Ramsey J, Siegele DA, Chisholm RL, Fey P, Aspromonte MC, Nugnes MV, Quaglia F, Tosatto S, Giglio M, Nadendla S, Antonazzo G, Attrill H, Dos Santos G, Marygold S, Strelets V, Tabone CJ, Thurmond J, Zhou P, Ahmed SH, Asanitthong P, Luna Buitrago D, Erdol MN, Gage MC, Ali Kadhum M, Li KYC, Long M, Michalak A, Pesala A, Pritazahra A, Saverimuttu SCC, Su R, Thurlow KE, Lovering RC, Logie C, Oliferenko S, Blake J, Christie K, Corbani L, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Smith C, Cuzick A, Seager J, Cooper L, Elser J, Jaiswal P, Gupta P, Jaiswal P, Naithani S, Lera-Ramirez M, Rutherford K, Wood V, De Pons JL, Dwinell MR, Hayman GT, Kaldunski ML, Kwitek AE, Laulederkind SJF, Tutaj MA, Vedi M, Wang SJ, D'Eustachio P, Aimo L, Axelsen K, Bridge A, Hyka-Nouspikel N, Morgat A, Aleksander SA, Cherry JM, Engel SR, Karra K, Miyasato SR, Nash RS, Skrzypek MS, Weng S, Wong ED, Bakker E, Berardini TZ, Reiser L, Auchincloss A, Axelsen K, Argoud… See abstract for full author list ➔ Gene Ontology Consortium, et al. Among authors: lovering rc. Genetics. 2023 May 4;224(1):iyad031. doi: 10.1093/genetics/iyad031. Genetics. 2023. PMID: 36866529 Free PMC article. Review.
Capturing heart valve development with Gene Ontology.
Ahmed SH, Deng AT, Huntley RP, Campbell NH, Lovering RC. Ahmed SH, et al. Among authors: lovering rc. Front Genet. 2023 Oct 17;14:1251902. doi: 10.3389/fgene.2023.1251902. eCollection 2023. Front Genet. 2023. PMID: 37915827 Free PMC article.
Insights into Online microRNA Bioinformatics Tools.
Luna Buitrago D, Lovering RC, Caporali A. Luna Buitrago D, et al. Among authors: lovering rc. Noncoding RNA. 2023 Mar 6;9(2):18. doi: 10.3390/ncrna9020018. Noncoding RNA. 2023. PMID: 36960963 Free PMC article. Review.
Tissue specific LRRK2 interactomes reveal a distinct striatal functional unit.
Zhao Y, Vavouraki N, Lovering RC, Escott-Price V, Harvey K, Lewis PA, Manzoni C. Zhao Y, et al. Among authors: lovering rc. PLoS Comput Biol. 2023 Jan 30;19(1):e1010847. doi: 10.1371/journal.pcbi.1010847. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36716346 Free PMC article.
Student biocuration projects as a learning environment.
Thurlow KE, Lovering RC, De Miranda Pinheiro S. Thurlow KE, et al. Among authors: lovering rc. F1000Res. 2021 Oct 8;10:1023. doi: 10.12688/f1000research.72808.2. eCollection 2021. F1000Res. 2021. PMID: 35211294 Free PMC article.
The gene regulation knowledge commons: the action area of GREEKC.
Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Vercruysse S, Zerbino DR, Lægreid A; GRECO Consortium. Kuiper M, et al. Among authors: lovering rc. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194768. doi: 10.1016/j.bbagrm.2021.194768. Epub 2021 Oct 30. Biochim Biophys Acta Gene Regul Mech. 2022. PMID: 34757206 Free article.
Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.
Juanes Cortés B, Vera-Ramos JA, Lovering RC, Gaudet P, Laegreid A, Logie C, Schulz S, Roldán-García MDM, Kuiper M, Fernández-Breis JT. Juanes Cortés B, et al. Among authors: lovering rc. Biochim Biophys Acta Gene Regul Mech. 2021 Nov-Dec;1864(11-12):194766. doi: 10.1016/j.bbagrm.2021.194766. Epub 2021 Oct 25. Biochim Biophys Acta Gene Regul Mech. 2021. PMID: 34710644 Free article.
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).
Ramsey J, McIntosh B, Renfro D, Aleksander SA, LaBonte S, Ross C, Zweifel AE, Liles N, Farrar S, Gill JJ, Erill I, Ades S, Berardini TZ, Bennett JA, Brady S, Britton R, Carbon S, Caruso SM, Clements D, Dalia R, Defelice M, Doyle EL, Friedberg I, Gurney SMR, Hughes L, Johnson A, Kowalski JM, Li D, Lovering RC, Mans TL, McCarthy F, Moore SD, Murphy R, Paustian TD, Perdue S, Peterson CN, Prüß BM, Saha MS, Sheehy RR, Tansey JT, Temple L, Thorman AW, Trevino S, Vollmer AC, Walbot V, Willey J, Siegele DA, Hu JC. Ramsey J, et al. Among authors: lovering rc. PLoS Comput Biol. 2021 Oct 28;17(10):e1009463. doi: 10.1371/journal.pcbi.1009463. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34710081 Free PMC article.
93 results