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Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4.
Blanco-Míguez A, Beghini F, Cumbo F, McIver LJ, Thompson KN, Zolfo M, Manghi P, Dubois L, Huang KD, Thomas AM, Nickols WA, Piccinno G, Piperni E, Punčochář M, Valles-Colomer M, Tett A, Giordano F, Davies R, Wolf J, Berry SE, Spector TD, Franzosa EA, Pasolli E, Asnicar F, Huttenhower C, Segata N. Blanco-Míguez A, et al. Among authors: thompson kn. Nat Biotechnol. 2023 Nov;41(11):1633-1644. doi: 10.1038/s41587-023-01688-w. Epub 2023 Feb 23. Nat Biotechnol. 2023. PMID: 36823356 Free PMC article.
Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes.
Thompson KN, Bonham KS, Ilott NE, Britton GJ, Colmenero P, Bullers SJ, McIver LJ, Ma S, Nguyen LH, Filer A, Brough I, Pearson C, Moussa C, Kumar V, Lam LH, Jackson MA, Pawluk A; Inflammatory Arthritis Microbiome Consortium (IAMC) investigators group; Kiriakidis S, Taylor PC, Wedderburn LR, Marsden B, Young SP, Littman DR, Faith JJ, Pratt AG, Bowness P, Raza K, Powrie F, Huttenhower C; IAMC. Thompson KN, et al. Sci Transl Med. 2023 Jul 26;15(706):eabn4722. doi: 10.1126/scitranslmed.abn4722. Epub 2023 Jul 26. Sci Transl Med. 2023. PMID: 37494472
Carrageenan and insulin resistance in humans: a randomised double-blind cross-over trial.
Wagner R, Buettner J, Heni M, Fritsche L, Kullmann S, Wagmüller M, Peter A, Preissl H, Machann J, Jumpertz von Schwartzenberg R, Birkenfeld AL, Pape UF, van Hall G, Plomgaard P, Häring HU, Fritsche A, Thompson KN, Klein R, Stefan N. Wagner R, et al. Among authors: thompson kn. BMC Med. 2024 Nov 26;22(1):558. doi: 10.1186/s12916-024-03771-8. BMC Med. 2024. PMID: 39593091 Free PMC article. Clinical Trial.
Evaluating metagenomic analyses for undercharacterized environments: what's needed to light up the microbial dark matter?
Nickols WA, McIver LJ, Walsh A, Zhang Y, Nearing JT, Asnicar F, Punčochář M, Segata N, Nguyen LH, Hartmann EM, Franzosa EA, Huttenhower C, Thompson KN. Nickols WA, et al. Among authors: thompson kn. bioRxiv [Preprint]. 2024 Nov 9:2024.11.08.622677. doi: 10.1101/2024.11.08.622677. bioRxiv. 2024. PMID: 39574575 Free PMC article. Preprint.
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts.
Manghi P, Bhosle A, Wang K, Marconi R, Selma-Royo M, Ricci L, Asnicar F, Golzato D, Ma W, Hang D, Thompson KN, Franzosa EA, Nabinejad A, Tamburini S, Rimm EB, Garrett WS, Sun Q, Chan AT, Valles-Colomer M, Arumugam M, Bermingham KM, Giordano F, Davies R, Hadjigeorgiou G, Wolf J, Strowig T, Berry SE, Huttenhower C, Spector TD, Segata N, Song M. Manghi P, et al. Among authors: thompson kn. Nat Microbiol. 2024 Dec;9(12):3120-3134. doi: 10.1038/s41564-024-01858-9. Epub 2024 Nov 18. Nat Microbiol. 2024. PMID: 39558133 Free PMC article.
Trajectories of childhood bullying behaviors and conduct problems: Associations with cognitive functioning in a nationally representative cohort study.
Thériault-Couture F, Agnew-Blais J, Carter Leno V, Danese A, Ganaesan K, Matthews T, Morneau-Vaillancourt G, Thompson KN, Shakoor S, Arseneault L. Thériault-Couture F, et al. Among authors: thompson kn. Dev Psychol. 2024 Aug 22. doi: 10.1037/dev0001788. Online ahead of print. Dev Psychol. 2024. PMID: 39172423
91 results