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decoupleR: ensemble of computational methods to infer biological activities from omics data.
Badia-I-Mompel P, Vélez Santiago J, Braunger J, Geiss C, Dimitrov D, Müller-Dott S, Taus P, Dugourd A, Holland CH, Ramirez Flores RO, Saez-Rodriguez J. Badia-I-Mompel P, et al. Among authors: holland ch. Bioinform Adv. 2022 Mar 8;2(1):vbac016. doi: 10.1093/bioadv/vbac016. eCollection 2022. Bioinform Adv. 2022. PMID: 36699385 Free PMC article.
FUNKI: interactive functional footprint-based analysis of omics data.
Hernansaiz-Ballesteros R, Holland CH, Dugourd A, Saez-Rodriguez J. Hernansaiz-Ballesteros R, et al. Among authors: holland ch. Bioinformatics. 2022 Mar 28;38(7):2075-2076. doi: 10.1093/bioinformatics/btac055. Bioinformatics. 2022. PMID: 35134857 Free PMC article.
Consensus Transcriptional Landscape of Human End-Stage Heart Failure.
Ramirez Flores RO, Lanzer JD, Holland CH, Leuschner F, Most P, Schultz JH, Levinson RT, Saez-Rodriguez J. Ramirez Flores RO, et al. Among authors: holland ch. J Am Heart Assoc. 2021 Apr 6;10(7):e019667. doi: 10.1161/JAHA.120.019667. Epub 2021 Mar 31. J Am Heart Assoc. 2021. PMID: 33787284 Free PMC article. Review.
Transcriptomic Cross-Species Analysis of Chronic Liver Disease Reveals Consistent Regulation Between Humans and Mice.
Holland CH, Ramirez Flores RO, Myllys M, Hassan R, Edlund K, Hofmann U, Marchan R, Cadenas C, Reinders J, Hoehme S, Seddek AL, Dooley S, Keitel V, Godoy P, Begher-Tibbe B, Trautwein C, Rupp C, Mueller S, Longerich T, Hengstler JG, Saez-Rodriguez J, Ghallab A. Holland CH, et al. Hepatol Commun. 2022 Jan;6(1):161-177. doi: 10.1002/hep4.1797. Epub 2021 Aug 28. Hepatol Commun. 2022. PMID: 34558834 Free PMC article.
A Functional Landscape of CKD Entities From Public Transcriptomic Data.
Tajti F, Kuppe C, Antoranz A, Ibrahim MM, Kim H, Ceccarelli F, Holland CH, Olauson H, Floege J, Alexopoulos LG, Kramann R, Saez-Rodriguez J. Tajti F, et al. Among authors: holland ch. Kidney Int Rep. 2019 Nov 13;5(2):211-224. doi: 10.1016/j.ekir.2019.11.005. eCollection 2020 Feb. Kidney Int Rep. 2019. PMID: 32043035 Free PMC article.
Transcription Factor Activity Inference in Systemic Lupus Erythematosus.
Lopez-Dominguez R, Toro-Dominguez D, Martorell-Marugan J, Garcia-Moreno A, Holland CH, Saez-Rodriguez J, Goldman D, Petri MA, Alarcon-Riquelme ME, Carmona-Saez P. Lopez-Dominguez R, et al. Among authors: holland ch. Life (Basel). 2021 Apr 1;11(4):299. doi: 10.3390/life11040299. Life (Basel). 2021. PMID: 33915751 Free PMC article.
28 results