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Page 1
Oligodendrocyte precursor cells ingest axons in the mouse neocortex.
Buchanan J, Elabbady L, Collman F, Jorstad NL, Bakken TE, Ott C, Glatzer J, Bleckert AA, Bodor AL, Brittain D, Bumbarger DJ, Mahalingam G, Seshamani S, Schneider-Mizell C, Takeno MM, Torres R, Yin W, Hodge RD, Castro M, Dorkenwald S, Ih D, Jordan CS, Kemnitz N, Lee K, Lu R, Macrina T, Mu S, Popovych S, Silversmith WM, Tartavull I, Turner NL, Wilson AM, Wong W, Wu J, Zlateski A, Zung J, Lippincott-Schwartz J, Lein ES, Seung HS, Bergles DE, Reid RC, da Costa NM. Buchanan J, et al. Proc Natl Acad Sci U S A. 2022 Nov 29;119(48):e2202580119. doi: 10.1073/pnas.2202580119. Epub 2022 Nov 23. Proc Natl Acad Sci U S A. 2022. PMID: 36417438 Free PMC article.
Binary and analog variation of synapses between cortical pyramidal neurons.
Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Wong W, Castro M, Jordan CS, Wilson AM, Froudarakis E, Buchanan J, Takeno MM, Torres R, Mahalingam G, Collman F, Schneider-Mizell CM, Bumbarger DJ, Li Y, Becker L, Suckow S, Reimer J, Tolias AS, Macarico da Costa N, Reid RC, Seung HS. Dorkenwald S, et al. Among authors: buchanan j. Elife. 2022 Nov 16;11:e76120. doi: 10.7554/eLife.76120. Elife. 2022. PMID: 36382887 Free PMC article.
Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex.
Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, Bae JA, Castro MA, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J; MICrONS Consortium; Reimer J, Tolias AS, Seung HS, Reid RC, Collman F, Maçarico da Costa N. Schneider-Mizell CM, et al. Among authors: buchanan j. bioRxiv [Preprint]. 2024 Jan 6:2023.01.23.525290. doi: 10.1101/2023.01.23.525290. bioRxiv. 2024. PMID: 36747710 Free PMC article. Preprint.
NEURD offers automated proofreading and feature extraction for connectomics.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin A, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yu SC, Yin W, Xenes D, Kitchell LM, Rivlin PK, Rose VA, Bishop CA, Wester B, Froudarakis E, Walker EY, Sinz FH, Seung HS, Collman F, da Costa NM, Reid RC, Pitkow X, Tolias AS, Reimer J. Celii B, et al. Among authors: buchanan j. bioRxiv [Preprint]. 2024 Sep 23:2023.03.14.532674. doi: 10.1101/2023.03.14.532674. bioRxiv. 2024. PMID: 36993282 Free PMC article. Preprint.
Functional connectomics reveals general wiring rule in mouse visual cortex.
Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J, Ding Z, Patel S, Ntanavara L, Froebe R, Ponder K, Muhammad T, Alexander Bae J, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Yatsenko D, Froudarakis E, Sinz F, Josić K, Rosenbaum R, Sebastian Seung H, Collman F, da Costa NM, Clay Reid R, Walker EY, Pitkow X, Reimer J, Tolias AS. Ding Z, et al. Among authors: buchanan j. bioRxiv [Preprint]. 2024 Oct 14:2023.03.13.531369. doi: 10.1101/2023.03.13.531369. bioRxiv. 2024. PMID: 36993398 Free PMC article. Preprint.
Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types.
Gamlin CR, Schneider-Mizell CM, Mallory M, Elabbady L, Gouwens N, Williams G, Mukora A, Dalley R, Bodor A, Brittain D, Buchanan J, Bumbarger D, Kapner D, Kinn S, Mahalingam G, Seshamani S, Takeno M, Torres R, Yin W, Nicovich PR, Bae JA, Castro MA, Dorkenwald S, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J, Yu S, Berg J, Jarsky T, Lee B, Seung HS, Zeng H, Reid RC, Collman F, da Costa NM, Sorensen SA. Gamlin CR, et al. Among authors: buchanan j. bioRxiv [Preprint]. 2023 Mar 24:2023.03.22.533857. doi: 10.1101/2023.03.22.533857. bioRxiv. 2023. PMID: 36993629 Free PMC article. Preprint.
CAVE: Connectome Annotation Versioning Engine.
Dorkenwald S, Schneider-Mizell CM, Brittain D, Halageri A, Jordan C, Kemnitz N, Castro MA, Silversmith W, Maitin-Shephard J, Troidl J, Pfister H, Gillet V, Xenes D, Bae JA, Bodor AL, Buchanan J, Bumbarger DJ, Elabbady L, Jia Z, Kapner D, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Reid RC, da Costa NM, Seung HS, Collman F. Dorkenwald S, et al. Among authors: buchanan j. bioRxiv [Preprint]. 2023 Jul 28:2023.07.26.550598. doi: 10.1101/2023.07.26.550598. bioRxiv. 2023. PMID: 37546753 Free PMC article. Preprint.
1,588 results