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proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
Fullam A, Letunic I, Schmidt TSB, Ducarmon QR, Karcher N, Khedkar S, Kuhn M, Larralde M, Maistrenko OM, Malfertheiner L, Milanese A, Rodrigues JFM, Sanchis-López C, Schudoma C, Szklarczyk D, Sunagawa S, Zeller G, Huerta-Cepas J, von Mering C, Bork P, Mende DR. Fullam A, et al. Among authors: schudoma c. Nucleic Acids Res. 2023 Jan 6;51(D1):D760-D766. doi: 10.1093/nar/gkac1078. Nucleic Acids Res. 2023. PMID: 36408900 Free PMC article.
Endogenous Arabidopsis messenger RNAs transported to distant tissues.
Thieme CJ, Rojas-Triana M, Stecyk E, Schudoma C, Zhang W, Yang L, Miñambres M, Walther D, Schulze WX, Paz-Ares J, Scheible WR, Kragler F. Thieme CJ, et al. Among authors: schudoma c. Nat Plants. 2015 Mar 23;1(4):15025. doi: 10.1038/nplants.2015.25. Nat Plants. 2015. PMID: 27247031
Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations.
Nishijima S, Stankevic E, Aasmets O, Schmidt TSB, Nagata N, Keller MI, Ferretti P, Juel HB, Fullam A, Robbani SM, Schudoma C, Hansen JK, Holm LA, Israelsen M, Schierwagen R, Torp N, Telzerow A, Hercog R, Kandels S, Hazenbrink DHM, Arumugam M, Bendtsen F, Brøns C, Fonvig CE, Holm JC, Nielsen T, Pedersen JS, Thiele MS, Trebicka J, Org E, Krag A, Hansen T, Kuhn M, Bork P; GALAXY and MicrobLiver Consortia. Nishijima S, et al. Among authors: schudoma c. Cell. 2024 Nov 4:S0092-8674(24)01204-2. doi: 10.1016/j.cell.2024.10.022. Online ahead of print. Cell. 2024. PMID: 39541968 Free article.
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.
Perez-Sepulveda BM, Heavens D, Pulford CV, Predeus AV, Low R, Webster H, Dykes GF, Schudoma C, Rowe W, Lipscombe J, Watkins C, Kumwenda B, Shearer N, Costigan K, Baker KS, Feasey NA, Hinton JCD, Hall N; 10KSG consortium. Perez-Sepulveda BM, et al. Among authors: schudoma c. Genome Biol. 2021 Dec 21;22(1):349. doi: 10.1186/s13059-021-02536-3. Genome Biol. 2021. PMID: 34930397 Free PMC article.
Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family.
Klymiuk V, Yaniv E, Huang L, Raats D, Fatiukha A, Chen S, Feng L, Frenkel Z, Krugman T, Lidzbarsky G, Chang W, Jääskeläinen MJ, Schudoma C, Paulin L, Laine P, Bariana H, Sela H, Saleem K, Sørensen CK, Hovmøller MS, Distelfeld A, Chalhoub B, Dubcovsky J, Korol AB, Schulman AH, Fahima T. Klymiuk V, et al. Among authors: schudoma c. Nat Commun. 2018 Oct 3;9(1):3735. doi: 10.1038/s41467-018-06138-9. Nat Commun. 2018. PMID: 30282993 Free PMC article.
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