Edgar RC - Search Results

1

Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny.

Edgar RC. Edgar RC. Nat Commun. 2022 Nov 15;13(1):6968. doi: 10.1038/s41467-022-34630-w. Nat Commun. 2022. PMID: 36379955 Free PMC article.

2

Simultaneous sequence alignment and tree construction using hidden Markov models.

Edgar RC, Sjölander K. Edgar RC, et al. Pac Symp Biocomput. 2003:180-91. Pac Symp Biocomput. 2003. PMID: 12603027 Free article.

3

SATCHMO: sequence alignment and tree construction using hidden Markov models.

Edgar RC, Sjölander K. Edgar RC, et al. Bioinformatics. 2003 Jul 22;19(11):1404-11. doi: 10.1093/bioinformatics/btg158. Bioinformatics. 2003. PMID: 12874053

4

Local homology recognition and distance measures in linear time using compressed amino acid alphabets.

Edgar RC. Edgar RC. Nucleic Acids Res. 2004 Jan 16;32(1):380-5. doi: 10.1093/nar/gkh180. Print 2004. Nucleic Acids Res. 2004. PMID: 14729922 Free PMC article.

5

A comparison of scoring functions for protein sequence profile alignment.

Edgar RC, Sjölander K. Edgar RC, et al. Bioinformatics. 2004 May 22;20(8):1301-8. doi: 10.1093/bioinformatics/bth090. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962936

6

MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Edgar RC. Edgar RC. Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. doi: 10.1093/nar/gkh340. Print 2004. Nucleic Acids Res. 2004. PMID: 15034147 Free PMC article.

7

Multiple sequence alignment.

Edgar RC, Batzoglou S. Edgar RC, et al. Curr Opin Struct Biol. 2006 Jun;16(3):368-73. doi: 10.1016/j.sbi.2006.04.004. Epub 2006 May 5. Curr Opin Struct Biol. 2006. PMID: 16679011 Review.

8

UPARSE: highly accurate OTU sequences from microbial amplicon reads.

Edgar RC. Edgar RC. Nat Methods. 2013 Oct;10(10):996-8. doi: 10.1038/nmeth.2604. Epub 2013 Aug 18. Nat Methods. 2013. PMID: 23955772

9

Petabase-scale sequence alignment catalyses viral discovery.

Edgar RC, Taylor B, Lin V, Altman T, Barbera P, Meleshko D, Lohr D, Novakovsky G, Buchfink B, Al-Shayeb B, Banfield JF, de la Peña M, Korobeynikov A, Chikhi R, Babaian A. Edgar RC, et al. Nature. 2022 Feb;602(7895):142-147. doi: 10.1038/s41586-021-04332-2. Epub 2022 Jan 26. Nature. 2022. PMID: 35082445

10

Hybrids of RNA viruses and viroid-like elements replicate in fungi.

Forgia M, Navarro B, Daghino S, Cervera A, Gisel A, Perotto S, Aghayeva DN, Akinyuwa MF, Gobbi E, Zheludev IN, Edgar RC, Chikhi R, Turina M, Babaian A, Di Serio F, de la Peña M. Forgia M, et al. Among authors: edgar rc. Nat Commun. 2023 May 5;14(1):2591. doi: 10.1038/s41467-023-38301-2. Nat Commun. 2023. PMID: 37147358 Free PMC article.

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