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The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Szklarczyk D, Kirsch R, Koutrouli M, Nastou K, Mehryary F, Hachilif R, Gable AL, Fang T, Doncheva NT, Pyysalo S, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: pyysalo s. Nucleic Acids Res. 2023 Jan 6;51(D1):D638-D646. doi: 10.1093/nar/gkac1000. Nucleic Acids Res. 2023. PMID: 36370105 Free PMC article.
Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical-protein relations.
Miranda-Escalada A, Mehryary F, Luoma J, Estrada-Zavala D, Gasco L, Pyysalo S, Valencia A, Krallinger M. Miranda-Escalada A, et al. Among authors: pyysalo s. Database (Oxford). 2023 Nov 28;2023:baad080. doi: 10.1093/database/baad080. Database (Oxford). 2023. PMID: 38015956 Free PMC article.
The STRING database in 2025: protein networks with directionality of regulation.
Szklarczyk D, Nastou K, Koutrouli M, Kirsch R, Mehryary F, Hachilif R, Hu D, Peluso ME, Huang Q, Fang T, Doncheva NT, Pyysalo S, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: pyysalo s. Nucleic Acids Res. 2024 Nov 18:gkae1113. doi: 10.1093/nar/gkae1113. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39558183
Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets'.
Szklarczyk D, Gable AL, Nastou KC, Lyon D, Kirsch R, Pyysalo S, Doncheva NT, Legeay M, Fang T, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: pyysalo s. Nucleic Acids Res. 2021 Oct 11;49(18):10800. doi: 10.1093/nar/gkab835. Nucleic Acids Res. 2021. PMID: 34530444 Free PMC article. No abstract available.
46 results