Orengo CA - Search Results

1

InterPro in 2022.

Paysan-Lafosse T, Blum M, Chuguransky S, Grego T, Pinto BL, Salazar GA, Bileschi ML, Bork P, Bridge A, Colwell L, Gough J, Haft DH, Letunić I, Marchler-Bauer A, Mi H, Natale DA, Orengo CA, Pandurangan AP, Rivoire C, Sigrist CJA, Sillitoe I, Thanki N, Thomas PD, Tosatto SCE, Wu CH, Bateman A. Paysan-Lafosse T, et al. Among authors: orengo ca. Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. doi: 10.1093/nar/gkac993. Nucleic Acids Res. 2023. PMID: 36350672 Free PMC article.

2

The CATH Database provides insights into protein structure/function relationships.

Orengo CA, Pearl FM, Bray JE, Todd AE, Martin AC, Lo Conte L, Thornton JM. Orengo CA, et al. Nucleic Acids Res. 1999 Jan 1;27(1):275-9. doi: 10.1093/nar/27.1.275. Nucleic Acids Res. 1999. PMID: 9847200 Free PMC article.

3

Assigning genomic sequences to CATH.

Pearl FM, Lee D, Bray JE, Sillitoe I, Todd AE, Harrison AP, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2000 Jan 1;28(1):277-82. doi: 10.1093/nar/28.1.277. Nucleic Acids Res. 2000. PMID: 10592246 Free PMC article.

4

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2001 Jan 1;29(1):223-7. doi: 10.1093/nar/29.1.223. Nucleic Acids Res. 2001. PMID: 11125098 Free PMC article.

5

Review: what can structural classifications reveal about protein evolution?

Orengo CA, Sillitoe I, Reeves G, Pearl FM. Orengo CA, et al. J Struct Biol. 2001 May-Jun;134(2-3):145-65. doi: 10.1006/jsbi.2001.4398. J Struct Biol. 2001. PMID: 11551176 Review.

6

The CATH protein family database: a resource for structural and functional annotation of genomes.

Orengo CA, Bray JE, Buchan DW, Harrison A, Lee D, Pearl FM, Sillitoe I, Todd AE, Thornton JM. Orengo CA, et al. Proteomics. 2002 Jan;2(1):11-21. Proteomics. 2002. PMID: 11788987 Review.

7

The CATH database: an extended protein family resource for structural and functional genomics.

Pearl FM, Bennett CF, Bray JE, Harrison AP, Martin N, Shepherd A, Sillitoe I, Thornton J, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2003 Jan 1;31(1):452-5. doi: 10.1093/nar/gkg062. Nucleic Acids Res. 2003. PMID: 12520050 Free PMC article.

8

Gene3D: structural assignments for the biologist and bioinformaticist alike.

Buchan DW, Rison SC, Bray JE, Lee D, Pearl F, Thornton JM, Orengo CA. Buchan DW, et al. Among authors: orengo ca. Nucleic Acids Res. 2003 Jan 1;31(1):469-73. doi: 10.1093/nar/gkg051. Nucleic Acids Res. 2003. PMID: 12520054 Free PMC article.

9

Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.

Marsden RL, Lee D, Maibaum M, Yeats C, Orengo CA. Marsden RL, et al. Among authors: orengo ca. Nucleic Acids Res. 2006 Feb 15;34(3):1066-80. doi: 10.1093/nar/gkj494. Print 2006. Nucleic Acids Res. 2006. PMID: 16481312 Free PMC article.

10

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.

Greene LH, Lewis TE, Addou S, Cuff A, Dallman T, Dibley M, Redfern O, Pearl F, Nambudiry R, Reid A, Sillitoe I, Yeats C, Thornton JM, Orengo CA. Greene LH, et al. Among authors: orengo ca. Nucleic Acids Res. 2007 Jan;35(Database issue):D291-7. doi: 10.1093/nar/gkl959. Epub 2006 Nov 29. Nucleic Acids Res. 2007. PMID: 17135200 Free PMC article.

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