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Spatially resolved gene regulatory and disease-related vulnerability map of the adult Macaque cortex.
Lei Y, Cheng M, Li Z, Zhuang Z, Wu L, Sun Y, Han L, Huang Z, Wang Y, Wang Z, Xu L, Yuan Y, Liu S, Pan T, Xie J, Liu C, Volpe G, Ward C, Lai Y, Xu J, Wang M, Yu H, Sun H, Yu Q, Wu L, Wang C, Wong CW, Liu W, Xu L, Wei J, Chen D, Shang Z, Li G, Ma K, Cheng L, Ling F, Tan T, Chen K, Tasic B, Dean M, Ji W, Yang H, Gu Y, Esteban MA, Li Y, Chen A, Niu Y, Zeng H, Hou Y, Liu L, Liu S, Xu X. Lei Y, et al. Among authors: yuan y. Nat Commun. 2022 Nov 8;13(1):6747. doi: 10.1038/s41467-022-34413-3. Nat Commun. 2022. PMID: 36347848 Free PMC article.
Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity.
Liu L, Liu C, Quintero A, Wu L, Yuan Y, Wang M, Cheng M, Leng L, Xu L, Dong G, Li R, Liu Y, Wei X, Xu J, Chen X, Lu H, Chen D, Wang Q, Zhou Q, Lin X, Li G, Liu S, Wang Q, Wang H, Fink JL, Gao Z, Liu X, Hou Y, Zhu S, Yang H, Ye Y, Lin G, Chen F, Herrmann C, Eils R, Shang Z, Xu X. Liu L, et al. Among authors: yuan y. Nat Commun. 2019 Jan 28;10(1):470. doi: 10.1038/s41467-018-08205-7. Nat Commun. 2019. PMID: 30692544 Free PMC article.
An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Liu C, Wang M, Wei X, Wu L, Xu J, Dai X, Xia J, Cheng M, Yuan Y, Zhang P, Li J, Feng T, Chen A, Zhang W, Chen F, Shang Z, Zhang X, Peters BA, Liu L. Liu C, et al. Among authors: yuan y. Sci Data. 2019 May 20;6(1):65. doi: 10.1038/s41597-019-0071-0. Sci Data. 2019. PMID: 31110271 Free PMC article.
Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain.
Wang M, Liu Y, Wen T, Liu W, Gao Q, Zhao J, Xiong Z, Wang Z, Jiang W, Yu Y, Wu L, Yuan Y, Wei X, Xu J, Cheng M, Zhang P, Li P, Hou Y, Yang H, Zhang G, Li Q, Liu C, Liu L. Wang M, et al. Among authors: yuan y. Sci Data. 2020 Jul 8;7(1):217. doi: 10.1038/s41597-020-0556-x. Sci Data. 2020. PMID: 32641764 Free PMC article.
Dynamic cell transition and immune response landscapes of axolotl limb regeneration revealed by single-cell analysis.
Li H, Wei X, Zhou L, Zhang W, Wang C, Guo Y, Li D, Chen J, Liu T, Zhang Y, Ma S, Wang C, Tan F, Xu J, Liu Y, Yuan Y, Chen L, Wang Q, Qu J, Shen Y, Liu S, Fan G, Liu L, Liu X, Hou Y, Liu GH, Gu Y, Xu X. Li H, et al. Among authors: yuan y. Protein Cell. 2021 Jan;12(1):57-66. doi: 10.1007/s13238-020-00763-1. Protein Cell. 2021. PMID: 32748350 Free PMC article. No abstract available.
Single-Cell Sequencing of Peripheral Mononuclear Cells Reveals Distinct Immune Response Landscapes of COVID-19 and Influenza Patients.
Zhu L, Yang P, Zhao Y, Zhuang Z, Wang Z, Song R, Zhang J, Liu C, Gao Q, Xu Q, Wei X, Sun HX, Ye B, Wu Y, Zhang N, Lei G, Yu L, Yan J, Diao G, Meng F, Bai C, Mao P, Yu Y, Wang M, Yuan Y, Deng Q, Li Z, Huang Y, Hu G, Liu Y, Wang X, Xu Z, Liu P, Bi Y, Shi Y, Zhang S, Chen Z, Wang J, Xu X, Wu G, Wang FS, Gao GF, Liu L, Liu WJ. Zhu L, et al. Among authors: yuan y. Immunity. 2020 Sep 15;53(3):685-696.e3. doi: 10.1016/j.immuni.2020.07.009. Epub 2020 Jul 19. Immunity. 2020. PMID: 32783921 Free PMC article.
An ATAC-seq Dataset Uncovers the Regulatory Landscape During Axolotl Limb Regeneration.
Wei X, Li H, Guo Y, Zhao X, Liu Y, Zou X, Zhou L, Yuan Y, Qin Y, Mao C, Huang G, Yu Y, Deng Q, Feng W, Xu J, Wang M, Liu S, Yang H, Liu L, Liu C, Gu Y. Wei X, et al. Among authors: yuan y. Front Cell Dev Biol. 2021 Mar 30;9:651145. doi: 10.3389/fcell.2021.651145. eCollection 2021. Front Cell Dev Biol. 2021. PMID: 33869207 Free PMC article. No abstract available.
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