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Local monitoring of SARS-CoV-2 variants in two large California counties in 2021.
Kojima N, Khorosheva E, Lopez L, Hanewich-Hollatz M, Ignacio-Espinoza JC, Brobeck M, Chen J, Geluz M, Hess V, Quasem S, Sandhu N, Salfati E, Shacreaw M, Way G, Xie Z, Slepnev V, Klausner JD. Kojima N, et al. Among authors: ignacio espinoza jc. Sci Rep. 2022 Oct 11;12(1):17046. doi: 10.1038/s41598-022-21481-0. Sci Rep. 2022. PMID: 36221029 Free PMC article.
Benchmarking microbial growth rate predictions from metagenomes.
Long AM, Hou S, Ignacio-Espinoza JC, Fuhrman JA. Long AM, et al. Among authors: ignacio espinoza jc. ISME J. 2021 Jan;15(1):183-195. doi: 10.1038/s41396-020-00773-1. Epub 2020 Sep 16. ISME J. 2021. PMID: 32939027 Free PMC article.
A network-based integrated framework for predicting virus-prokaryote interactions.
Wang W, Ren J, Tang K, Dart E, Ignacio-Espinoza JC, Fuhrman JA, Braun J, Sun F, Ahlgren NA. Wang W, et al. Among authors: ignacio espinoza jc. NAR Genom Bioinform. 2020 Jun;2(2):lqaa044. doi: 10.1093/nargab/lqaa044. Epub 2020 Jun 23. NAR Genom Bioinform. 2020. PMID: 32626849 Free PMC article.
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.
Martinez MA, Woodcroft BJ, Ignacio Espinoza JC, Zayed AA, Singleton CM, Boyd JA, Li YF, Purvine S, Maughan H, Hodgkins SB, Anderson D, Sederholm M, Temperton B, Bolduc B, Saleska SR, Tyson GW, Rich VI; IsoGenie Project Coordinators; Saleska SR, Tyson GW, Rich VI. Martinez MA, et al. Among authors: ignacio espinoza jc. Syst Appl Microbiol. 2019 Jan;42(1):54-66. doi: 10.1016/j.syapm.2018.12.003. Epub 2018 Dec 14. Syst Appl Microbiol. 2019. PMID: 30616913 Free article.
A non-tailed twist in the viral tale.
Ignacio-Espinoza JC, Fuhrman JA. Ignacio-Espinoza JC, et al. Nature. 2018 Feb 1;554(7690):38-39. doi: 10.1038/d41586-018-00923-8. Nature. 2018. PMID: 29388959 No abstract available.
A non-tailed twist in the viral tale.
Ignacio-Espinoza JC, Fuhrman JA. Ignacio-Espinoza JC, et al. Nature. 2018 Feb;554(7690):38-39. doi: 10.1038/d41586-018-00923-8. Nature. 2018. PMID: 32094830 No abstract available.
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.
Gregory AC, Solonenko SA, Ignacio-Espinoza JC, LaButti K, Copeland A, Sudek S, Maitland A, Chittick L, Dos Santos F, Weitz JS, Worden AZ, Woyke T, Sullivan MB. Gregory AC, et al. Among authors: ignacio espinoza jc. BMC Genomics. 2016 Nov 16;17(1):930. doi: 10.1186/s12864-016-3286-x. BMC Genomics. 2016. PMID: 27852226 Free PMC article.
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