Liu CC - Search Results

1

Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer.

Stackpole ML, Zeng W, Li S, Liu CC, Zhou Y, He S, Yeh A, Wang Z, Sun F, Li Q, Yuan Z, Yildirim A, Chen PJ, Winograd P, Tran B, Lee YT, Li PS, Noor Z, Yokomizo M, Ahuja P, Zhu Y, Tseng HR, Tomlinson JS, Garon E, French S, Magyar CE, Dry S, Lajonchere C, Geschwind D, Choi G, Saab S, Alber F, Wong WH, Dubinett SM, Aberle DR, Agopian V, Han SB, Ni X, Li W, Zhou XJ. Stackpole ML, et al. Among authors: liu cc. Nat Commun. 2022 Sep 29;13(1):5566. doi: 10.1038/s41467-022-32995-6. Nat Commun. 2022. PMID: 36175411 Free PMC article.

2

CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.

Li W, Li Q, Kang S, Same M, Zhou Y, Sun C, Liu CC, Matsuoka L, Sher L, Wong WH, Alber F, Zhou XJ. Li W, et al. Among authors: liu cc. Nucleic Acids Res. 2018 Sep 6;46(15):e89. doi: 10.1093/nar/gky423. Nucleic Acids Res. 2018. PMID: 29897492 Free PMC article.

3

Algorithm to identify frequent coupled modules from two-layered network series: application to study transcription and splicing coupling.

Li W, Dai C, Liu CC, Zhou XJ. Li W, et al. Among authors: liu cc. J Comput Biol. 2012 Jun;19(6):710-30. doi: 10.1089/cmb.2012.0025. J Comput Biol. 2012. PMID: 22697243 Free PMC article.

4

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.

Li W, Zhang S, Liu CC, Zhou XJ. Li W, et al. Among authors: liu cc. Bioinformatics. 2012 Oct 1;28(19):2458-66. doi: 10.1093/bioinformatics/bts476. Epub 2012 Aug 3. Bioinformatics. 2012. PMID: 22863767 Free PMC article.

5

Bayesian approach to transforming public gene expression repositories into disease diagnosis databases.

Huang H, Liu CC, Zhou XJ. Huang H, et al. Among authors: liu cc. Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6823-8. doi: 10.1073/pnas.0912043107. Epub 2010 Apr 1. Proc Natl Acad Sci U S A. 2010. PMID: 20360561 Free PMC article.

6

Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.

Zhang S, Liu CC, Li W, Shen H, Laird PW, Zhou XJ. Zhang S, et al. Among authors: liu cc. Nucleic Acids Res. 2012 Oct;40(19):9379-91. doi: 10.1093/nar/gks725. Epub 2012 Aug 8. Nucleic Acids Res. 2012. PMID: 22879375 Free PMC article.

7

High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method.

Li W, Kang S, Liu CC, Zhang S, Shi Y, Liu Y, Zhou XJ. Li W, et al. Among authors: liu cc, liu y. Nucleic Acids Res. 2014 Apr;42(6):e39. doi: 10.1093/nar/gkt1362. Epub 2013 Dec 25. Nucleic Acids Res. 2014. PMID: 24369432 Free PMC article.

8

Pushing the annotation of cellular activities to a higher resolution: Predicting functions at the isoform level.

Li W, Liu CC, Kang S, Li JR, Tseng YT, Zhou XJ. Li W, et al. Among authors: liu cc. Methods. 2016 Jan 15;93:110-8. doi: 10.1016/j.ymeth.2015.07.016. Epub 2015 Jul 31. Methods. 2016. PMID: 26238263 Review.

9

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells.

Li JR, Sun CH, Li W, Chao RF, Huang CC, Zhou XJ, Liu CC. Li JR, et al. Among authors: liu cc. Nucleic Acids Res. 2016 Jan 4;44(D1):D944-51. doi: 10.1093/nar/gkv1282. Epub 2015 Nov 23. Nucleic Acids Res. 2016. PMID: 26602695 Free PMC article.

10

Integrative analysis of many weighted co-expression networks using tensor computation.

Li W, Liu CC, Zhang T, Li H, Waterman MS, Zhou XJ. Li W, et al. Among authors: liu cc. PLoS Comput Biol. 2011 Jun;7(6):e1001106. doi: 10.1371/journal.pcbi.1001106. Epub 2011 Jun 16. PLoS Comput Biol. 2011. PMID: 21698123 Free PMC article.

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