Chen Y - Search Results

1

GotEnzymes: an extensive database of enzyme parameter predictions.

Li F, Chen Y, Anton M, Nielsen J. Li F, et al. Among authors: chen y. Nucleic Acids Res. 2023 Jan 6;51(D1):D583-D586. doi: 10.1093/nar/gkac831. Nucleic Acids Res. 2023. PMID: 36169223 Free PMC article.

2

Flux control through protein phosphorylation in yeast.

Chen Y, Nielsen J. Chen Y, et al. FEMS Yeast Res. 2016 Dec 1;16(8). doi: 10.1093/femsyr/fow096. FEMS Yeast Res. 2016. PMID: 27797916 Review.

3

Systematic inference of functional phosphorylation events in yeast metabolism.

Chen Y, Wang Y, Nielsen J. Chen Y, et al. Bioinformatics. 2017 Jul 1;33(13):1995-2001. doi: 10.1093/bioinformatics/btx110. Bioinformatics. 2017. PMID: 28334215

4

Energy metabolism controls phenotypes by protein efficiency and allocation.

Chen Y, Nielsen J. Chen Y, et al. Proc Natl Acad Sci U S A. 2019 Aug 27;116(35):17592-17597. doi: 10.1073/pnas.1906569116. Epub 2019 Aug 12. Proc Natl Acad Sci U S A. 2019. PMID: 31405984 Free PMC article.

5

Genome-Scale Metabolic Modeling from Yeast to Human Cell Models of Complex Diseases: Latest Advances and Challenges.

Chen Y, Li G, Nielsen J. Chen Y, et al. Methods Mol Biol. 2019;2049:329-345. doi: 10.1007/978-1-4939-9736-7_19. Methods Mol Biol. 2019. PMID: 31602620

6

Rewiring carbon metabolism in yeast for high level production of aromatic chemicals.

Liu Q, Yu T, Li X, Chen Y, Campbell K, Nielsen J, Chen Y. Liu Q, et al. Among authors: chen y. Nat Commun. 2019 Oct 31;10(1):4976. doi: 10.1038/s41467-019-12961-5. Nat Commun. 2019. PMID: 31672987 Free PMC article.

7

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism.

Zhang J, Petersen SD, Radivojevic T, Ramirez A, Pérez-Manríquez A, Abeliuk E, Sánchez BJ, Costello Z, Chen Y, Fero MJ, Martin HG, Nielsen J, Keasling JD, Jensen MK. Zhang J, et al. Among authors: chen y. Nat Commun. 2020 Sep 25;11(1):4880. doi: 10.1038/s41467-020-17910-1. Nat Commun. 2020. PMID: 32978375 Free PMC article.

8

Yeast optimizes metal utilization based on metabolic network and enzyme kinetics.

Chen Y, Li F, Mao J, Chen Y, Nielsen J. Chen Y, et al. Proc Natl Acad Sci U S A. 2021 Mar 23;118(12):e2020154118. doi: 10.1073/pnas.2020154118. Proc Natl Acad Sci U S A. 2021. PMID: 33723053 Free PMC article.

9

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments.

Chen Y, van Pelt-KleinJan E, van Olst B, Douwenga S, Boeren S, Bachmann H, Molenaar D, Nielsen J, Teusink B. Chen Y, et al. Mol Syst Biol. 2021 Apr;17(4):e10093. doi: 10.15252/msb.202010093. Mol Syst Biol. 2021. PMID: 33821549 Free PMC article.

10

In vitro turnover numbers do not reflect in vivo activities of yeast enzymes.

Chen Y, Nielsen J. Chen Y, et al. Proc Natl Acad Sci U S A. 2021 Aug 10;118(32):e2108391118. doi: 10.1073/pnas.2108391118. Proc Natl Acad Sci U S A. 2021. PMID: 34341111 Free PMC article.

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