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TIAToolbox as an end-to-end library for advanced tissue image analytics.
Pocock J, Graham S, Vu QD, Jahanifar M, Deshpande S, Hadjigeorghiou G, Shephard A, Bashir RMS, Bilal M, Lu W, Epstein D, Minhas F, Rajpoot NM, Raza SEA. Pocock J, et al. Among authors: bashir rms. Commun Med (Lond). 2022 Sep 24;2:120. doi: 10.1038/s43856-022-00186-5. eCollection 2022. Commun Med (Lond). 2022. PMID: 36168445 Free PMC article.
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset.
Jiao Y, van der Laak J, Albarqouni S, Li Z, Tan T, Bhalerao A, Cheng S, Ma J, Pocock J, Pluim JPW, Koohbanani NA, Bashir RMS, Raza SEA, Liu S, Graham S, Wetstein S, Khurram SA, Liu X, Rajpoot N, Veta M, Ciompi F. Jiao Y, et al. Among authors: bashir rms. IEEE J Biomed Health Inform. 2024 Mar;28(3):1161-1172. doi: 10.1109/JBHI.2023.3327489. Epub 2024 Mar 6. IEEE J Biomed Health Inform. 2024. PMID: 37878422
DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system.
Da Q, Huang X, Li Z, Zuo Y, Zhang C, Liu J, Chen W, Li J, Xu D, Hu Z, Yi H, Guo Y, Wang Z, Chen L, Zhang L, He X, Zhang X, Mei K, Zhu C, Lu W, Shen L, Shi J, Li J, S S, Krishnamurthi G, Yang J, Lin T, Song Q, Liu X, Graham S, Bashir RMS, Yang C, Qin S, Tian X, Yin B, Zhao J, Metaxas DN, Li H, Wang C, Zhang S. Da Q, et al. Among authors: bashir rms. Med Image Anal. 2022 Aug;80:102485. doi: 10.1016/j.media.2022.102485. Epub 2022 May 24. Med Image Anal. 2022. PMID: 35679692