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Response to Comment on "Pushing the frontiers of density functionals by solving the fractional electron problem".
Kirkpatrick J, McMorrow B, Turban DHP, Gaunt AL, Spencer JS, Matthews AGDG, Obika A, Thiry L, Fortunato M, Pfau D, Román Castellanos L, Petersen S, Nelson AWR, Kohli P, Mori-Sánchez P, Hassabis D, Cohen AJ. Kirkpatrick J, et al. Among authors: hassabis d. Science. 2022 Aug 5;377(6606):eabq4282. doi: 10.1126/science.abq4282. Epub 2022 Aug 5. Science. 2022. PMID: 35926047
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.
Varadi M, Nair S, Sillitoe I, Tauriello G, Anyango S, Bienert S, Borges C, Deshpande M, Green T, Hassabis D, Hatos A, Hegedus T, Hekkelman ML, Joosten R, Jumper J, Laydon A, Molodenskiy D, Piovesan D, Salladini E, Salzberg SL, Sommer MJ, Steinegger M, Suhajda E, Svergun D, Tenorio-Ku L, Tosatto S, Tunyasuvunakool K, Waterhouse AM, Žídek A, Schwede T, Orengo C, Velankar S. Varadi M, et al. Among authors: hassabis d. Gigascience. 2022 Nov 30;11:giac118. doi: 10.1093/gigascience/giac118. Gigascience. 2022. PMID: 36448847 Free PMC article.
Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13).
Senior AW, Evans R, Jumper J, Kirkpatrick J, Sifre L, Green T, Qin C, Žídek A, Nelson AWR, Bridgland A, Penedones H, Petersen S, Simonyan K, Crossan S, Kohli P, Jones DT, Silver D, Kavukcuoglu K, Hassabis D. Senior AW, et al. Among authors: hassabis d. Proteins. 2019 Dec;87(12):1141-1148. doi: 10.1002/prot.25834. Proteins. 2019. PMID: 31602685 Free PMC article.
Improved protein structure prediction using potentials from deep learning.
Senior AW, Evans R, Jumper J, Kirkpatrick J, Sifre L, Green T, Qin C, Žídek A, Nelson AWR, Bridgland A, Penedones H, Petersen S, Simonyan K, Crossan S, Kohli P, Jones DT, Silver D, Kavukcuoglu K, Hassabis D. Senior AW, et al. Among authors: hassabis d. Nature. 2020 Jan;577(7792):706-710. doi: 10.1038/s41586-019-1923-7. Epub 2020 Jan 15. Nature. 2020. PMID: 31942072
Applying and improving AlphaFold at CASP14.
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, Tunyasuvunakool K, Bates R, Žídek A, Potapenko A, Bridgland A, Meyer C, Kohl SAA, Ballard AJ, Cowie A, Romera-Paredes B, Nikolov S, Jain R, Adler J, Back T, Petersen S, Reiman D, Clancy E, Zielinski M, Steinegger M, Pacholska M, Berghammer T, Silver D, Vinyals O, Senior AW, Kavukcuoglu K, Kohli P, Hassabis D. Jumper J, et al. Among authors: hassabis d. Proteins. 2021 Dec;89(12):1711-1721. doi: 10.1002/prot.26257. Proteins. 2021. PMID: 34599769 Free PMC article.
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S. Varadi M, et al. Among authors: hassabis d. Nucleic Acids Res. 2022 Jan 7;50(D1):D439-D444. doi: 10.1093/nar/gkab1061. Nucleic Acids Res. 2022. PMID: 34791371 Free PMC article.
Pushing the frontiers of density functionals by solving the fractional electron problem.
Kirkpatrick J, McMorrow B, Turban DHP, Gaunt AL, Spencer JS, Matthews AGDG, Obika A, Thiry L, Fortunato M, Pfau D, Castellanos LR, Petersen S, Nelson AWR, Kohli P, Mori-Sánchez P, Hassabis D, Cohen AJ. Kirkpatrick J, et al. Among authors: hassabis d. Science. 2021 Dec 10;374(6573):1385-1389. doi: 10.1126/science.abj6511. Epub 2021 Dec 9. Science. 2021. PMID: 34882476
Magnetic control of tokamak plasmas through deep reinforcement learning.
Degrave J, Felici F, Buchli J, Neunert M, Tracey B, Carpanese F, Ewalds T, Hafner R, Abdolmaleki A, de Las Casas D, Donner C, Fritz L, Galperti C, Huber A, Keeling J, Tsimpoukelli M, Kay J, Merle A, Moret JM, Noury S, Pesamosca F, Pfau D, Sauter O, Sommariva C, Coda S, Duval B, Fasoli A, Kohli P, Kavukcuoglu K, Hassabis D, Riedmiller M. Degrave J, et al. Among authors: hassabis d. Nature. 2022 Feb;602(7897):414-419. doi: 10.1038/s41586-021-04301-9. Epub 2022 Feb 16. Nature. 2022. PMID: 35173339 Free PMC article.
Discovering faster matrix multiplication algorithms with reinforcement learning.
Fawzi A, Balog M, Huang A, Hubert T, Romera-Paredes B, Barekatain M, Novikov A, R Ruiz FJ, Schrittwieser J, Swirszcz G, Silver D, Hassabis D, Kohli P. Fawzi A, et al. Among authors: hassabis d. Nature. 2022 Oct;610(7930):47-53. doi: 10.1038/s41586-022-05172-4. Epub 2022 Oct 5. Nature. 2022. PMID: 36198780 Free PMC article.
Accurate proteome-wide missense variant effect prediction with AlphaMissense.
Cheng J, Novati G, Pan J, Bycroft C, Žemgulytė A, Applebaum T, Pritzel A, Wong LH, Zielinski M, Sargeant T, Schneider RG, Senior AW, Jumper J, Hassabis D, Kohli P, Avsec Ž. Cheng J, et al. Among authors: hassabis d. Science. 2023 Sep 22;381(6664):eadg7492. doi: 10.1126/science.adg7492. Epub 2023 Sep 22. Science. 2023. PMID: 37733863 Free article.
83 results