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Cancer Imaging Phenomics via CaPTk: Multi-Institutional Prediction of Progression-Free Survival and Pattern of Recurrence in Glioblastoma.
Fathi Kazerooni A, Akbari H, Shukla G, Badve C, Rudie JD, Sako C, Rathore S, Bakas S, Pati S, Singh A, Bergman M, Ha SM, Kontos D, Nasrallah M, Bagley SJ, Lustig RA, O'Rourke DM, Sloan AE, Barnholtz-Sloan JS, Mohan S, Bilello M, Davatzikos C. Fathi Kazerooni A, et al. Among authors: singh a. JCO Clin Cancer Inform. 2020 Mar;4:234-244. doi: 10.1200/CCI.19.00121. JCO Clin Cancer Inform. 2020. PMID: 32191542 Free PMC article.
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview.
Pati S, Singh A, Rathore S, Gastounioti A, Bergman M, Ngo P, Ha SM, Bounias D, Minock J, Murphy G, Li H, Bhattarai A, Wolf A, Sridaran P, Kalarot R, Akbari H, Sotiras A, Thakur SP, Verma R, Shinohara RT, Yushkevich P, Fan Y, Kontos D, Davatzikos C, Bakas S. Pati S, et al. Among authors: singh a. Brainlesion. 2020;11993:380-394. doi: 10.1007/978-3-030-46643-5_38. Epub 2020 May 19. Brainlesion. 2020. PMID: 32754723 Free PMC article.
Multi-institutional noninvasive in vivo characterization of IDH, 1p/19q, and EGFRvIII in glioma using neuro-Cancer Imaging Phenomics Toolkit (neuro-CaPTk).
Rathore S, Mohan S, Bakas S, Sako C, Badve C, Pati S, Singh A, Bounias D, Ngo P, Akbari H, Gastounioti A, Bergman M, Bilello M, Shinohara RT, Yushkevich P, O'Rourke DM, Sloan AE, Kontos D, Nasrallah MP, Barnholtz-Sloan JS, Davatzikos C. Rathore S, et al. Among authors: singh a. Neurooncol Adv. 2021 Jan 23;2(Suppl 4):iv22-iv34. doi: 10.1093/noajnl/vdaa128. eCollection 2020 Dec. Neurooncol Adv. 2021. PMID: 33521638 Free PMC article.
Integrative radiomic analysis for pre-surgical prognostic stratification of glioblastoma patients: from advanced to basic MRI protocols.
Bakas S, Shukla G, Akbari H, Erus G, Sotiras A, Rathore S, Sako C, Min Ha S, Rozycki M, Singh A, Shinohara R, Bilello M, Davatzikos C. Bakas S, et al. Among authors: singh a. Proc SPIE Int Soc Opt Eng. 2020 Feb;11315:113151S. doi: 10.1117/12.2566505. Epub 2020 Mar 16. Proc SPIE Int Soc Opt Eng. 2020. PMID: 33746333 Free PMC article.
Deep Generative Medical Image Harmonization for Improving Cross-Site Generalization in Deep Learning Predictors.
Bashyam VM, Doshi J, Erus G, Srinivasan D, Abdulkadir A, Singh A, Habes M, Fan Y, Masters CL, Maruff P, Zhuo C, Völzke H, Johnson SC, Fripp J, Koutsouleris N, Satterthwaite TD, Wolf DH, Gur RE, Gur RC, Morris JC, Albert MS, Grabe HJ, Resnick SM, Bryan NR, Wittfeld K, Bülow R, Wolk DA, Shou H, Nasrallah IM, Davatzikos C; iSTAGING and PHENOM consortia. Bashyam VM, et al. Among authors: singh a. J Magn Reson Imaging. 2022 Mar;55(3):908-916. doi: 10.1002/jmri.27908. Epub 2021 Sep 25. J Magn Reson Imaging. 2022. PMID: 34564904 Free PMC article.
Interactive Machine Learning-Based Multi-Label Segmentation of Solid Tumors and Organs.
Bounias D, Singh A, Bakas S, Pati S, Rathore S, Akbari H, Bilello M, Greenberger BA, Lombardo J, Chitalia RD, Jahani N, Gastounioti A, Hershman M, Roshkovan L, Katz SI, Yousefi B, Lou C, Simpson AL, Do RKG, Shinohara RT, Kontos D, Nikita K, Davatzikos C. Bounias D, et al. Among authors: singh a. Appl Sci (Basel). 2021 Aug 2;11(16):7488. doi: 10.3390/app11167488. Epub 2021 Aug 15. Appl Sci (Basel). 2021. PMID: 34621541 Free PMC article.
Characterizing Heterogeneity in Neuroimaging, Cognition, Clinical Symptoms, and Genetics Among Patients With Late-Life Depression.
Wen J, Fu CHY, Tosun D, Veturi Y, Yang Z, Abdulkadir A, Mamourian E, Srinivasan D, Skampardoni I, Singh A, Nawani H, Bao J, Erus G, Shou H, Habes M, Doshi J, Varol E, Mackin RS, Sotiras A, Fan Y, Saykin AJ, Sheline YI, Shen L, Ritchie MD, Wolk DA, Albert M, Resnick SM, Davatzikos C; iSTAGING consortium, ADNI, BIOCARD, and BLSA. Wen J, et al. Among authors: singh a. JAMA Psychiatry. 2022 May 1;79(5):464-474. doi: 10.1001/jamapsychiatry.2022.0020. JAMA Psychiatry. 2022. PMID: 35262657 Free PMC article.
AI-based dimensional neuroimaging system for characterizing heterogeneity in brain structure and function in major depressive disorder: COORDINATE-MDD consortium design and rationale.
Fu CHY, Erus G, Fan Y, Antoniades M, Arnone D, Arnott SR, Chen T, Choi KS, Fatt CC, Frey BN, Frokjaer VG, Ganz M, Garcia J, Godlewska BR, Hassel S, Ho K, McIntosh AM, Qin K, Rotzinger S, Sacchet MD, Savitz J, Shou H, Singh A, Stolicyn A, Strigo I, Strother SC, Tosun D, Victor TA, Wei D, Wise T, Woodham RD, Zahn R, Anderson IM, Deakin JFW, Dunlop BW, Elliott R, Gong Q, Gotlib IH, Harmer CJ, Kennedy SH, Knudsen GM, Mayberg HS, Paulus MP, Qiu J, Trivedi MH, Whalley HC, Yan CG, Young AH, Davatzikos C. Fu CHY, et al. Among authors: singh a. BMC Psychiatry. 2023 Jan 23;23(1):59. doi: 10.1186/s12888-022-04509-7. BMC Psychiatry. 2023. PMID: 36690972 Free PMC article.
Genomic loci influence patterns of structural covariance in the human brain.
Wen J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, Yang Z, Erus G, Robert-Fitzgerald T, Singh A, Sotiras A, Boquet-Pujadas A, Mamourian E, Doshi J, Cui Y, Srinivasan D, Skampardoni I, Chen J, Hwang G, Bergman M, Bao J, Veturi Y, Zhou Z, Yang S, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Gur RC, Gur RE, Koutsouleris N, Wolf DH, Saykin AJ, Ritchie MD, Shen L, Thompson PM, Colliot O, Wittfeld K, Grabe HJ, Tosun D, Bilgel M, An Y, Marcus DS, LaMontagne P, Heckbert SR, Austin TR, Launer LJ, Espeland M, Masters CL, Maruff P, Fripp J, Johnson SC, Morris JC, Albert MS, Bryan RN, Resnick SM, Fan Y, Habes M, Wolk D, Shou H, Davatzikos C. Wen J, et al. Among authors: singh a. Proc Natl Acad Sci U S A. 2023 Dec 26;120(52):e2300842120. doi: 10.1073/pnas.2300842120. Epub 2023 Dec 21. Proc Natl Acad Sci U S A. 2023. PMID: 38127979 Free PMC article.
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