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BioUML-towards a universal research platform.
Kolpakov F, Akberdin I, Kiselev I, Kolmykov S, Kondrakhin Y, Kulyashov M, Kutumova E, Pintus S, Ryabova A, Sharipov R, Yevshin I, Zhatchenko S, Kel A. Kolpakov F, et al. Among authors: kolmykov s. Nucleic Acids Res. 2022 Jul 5;50(W1):W124-W131. doi: 10.1093/nar/gkac286. Nucleic Acids Res. 2022. PMID: 35536253 Free PMC article.
GTRD: a database on gene transcription regulation-2019 update.
Yevshin I, Sharipov R, Kolmykov S, Kondrakhin Y, Kolpakov F. Yevshin I, et al. Among authors: kolmykov s. Nucleic Acids Res. 2019 Jan 8;47(D1):D100-D105. doi: 10.1093/nar/gky1128. Nucleic Acids Res. 2019. PMID: 30445619 Free PMC article.
Population size estimation for quality control of ChIP-Seq datasets.
Kolmykov SK, Kondrakhin YV, Yevshin IS, Sharipov RN, Ryabova AS, Kolpakov FA. Kolmykov SK, et al. PLoS One. 2019 Aug 29;14(8):e0221760. doi: 10.1371/journal.pone.0221760. eCollection 2019. PLoS One. 2019. PMID: 31465497 Free PMC article.
GTRD: an integrated view of transcription regulation.
Kolmykov S, Yevshin I, Kulyashov M, Sharipov R, Kondrakhin Y, Makeev VJ, Kulakovskiy IV, Kel A, Kolpakov F. Kolmykov S, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D104-D111. doi: 10.1093/nar/gkaa1057. Nucleic Acids Res. 2021. PMID: 33231677 Free PMC article.
Landscape of allele-specific transcription factor binding in the human genome.
Abramov S, Boytsov A, Bykova D, Penzar DD, Yevshin I, Kolmykov SK, Fridman MV, Favorov AV, Vorontsov IE, Baulin E, Kolpakov F, Makeev VJ, Kulakovskiy IV. Abramov S, et al. Among authors: kolmykov sk. Nat Commun. 2021 May 12;12(1):2751. doi: 10.1038/s41467-021-23007-0. Nat Commun. 2021. PMID: 33980847 Free PMC article.
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.
Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV. Vorontsov IE, et al. Among authors: kolmykov s. Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077. Nucleic Acids Res. 2024. PMID: 37971293 Free PMC article.
Untranslated Region Sequences and the Efficacy of mRNA Vaccines against Tuberculosis.
Reshetnikov V, Terenin I, Shepelkova G, Yeremeev V, Kolmykov S, Nagornykh M, Kolosova E, Sokolova T, Zaborova O, Kukushkin I, Kazakova A, Kunyk D, Kirshina A, Vasileva O, Seregina K, Pateev I, Kolpakov F, Ivanov R. Reshetnikov V, et al. Among authors: kolmykov s. Int J Mol Sci. 2024 Jan 10;25(2):888. doi: 10.3390/ijms25020888. Int J Mol Sci. 2024. PMID: 38255961 Free PMC article.
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