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Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays.
Chen A, Liao S, Cheng M, Ma K, Wu L, Lai Y, Qiu X, Yang J, Xu J, Hao S, Wang X, Lu H, Chen X, Liu X, Huang X, Li Z, Hong Y, Jiang Y, Peng J, Liu S, Shen M, Liu C, Li Q, Yuan Y, Wei X, Zheng H, Feng W, Wang Z, Liu Y, Wang Z, Yang Y, Xiang H, Han L, Qin B, Guo P, Lai G, Muñoz-Cánoves P, Maxwell PH, Thiery JP, Wu QF, Zhao F, Chen B, Li M, Dai X, Wang S, Kuang H, Hui J, Wang L, Fei JF, Wang O, Wei X, Lu H, Wang B, Liu S, Gu Y, Ni M, Zhang W, Mu F, Yin Y, Yang H, Lisby M, Cornall RJ, Mulder J, Uhlén M, Esteban MA, Li Y, Liu L, Xu X, Wang J. Chen A, et al. Among authors: chen b, chen x. Cell. 2022 May 12;185(10):1777-1792.e21. doi: 10.1016/j.cell.2022.04.003. Epub 2022 May 4. Cell. 2022. PMID: 35512705 Free article.
cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs.
Fehlmann T, Reinheimer S, Geng C, Su X, Drmanac S, Alexeev A, Zhang C, Backes C, Ludwig N, Hart M, An D, Zhu Z, Xu C, Chen A, Ni M, Liu J, Li Y, Poulter M, Li Y, Stähler C, Drmanac R, Xu X, Meese E, Keller A. Fehlmann T, et al. Among authors: chen a. Clin Epigenetics. 2016 Nov 21;8:123. doi: 10.1186/s13148-016-0287-1. eCollection 2016. Clin Epigenetics. 2016. PMID: 27895807 Free PMC article.
The first chromosome-level genome for a marine mammal as a resource to study ecology and evolution.
Fan G, Zhang Y, Liu X, Wang J, Sun Z, Sun S, Zhang H, Chen J, Lv M, Han K, Tan X, Hu J, Guan R, Fu Y, Liu S, Chen X, Xu Q, Qin Y, Liu L, Bai J, Wang O, Tang J, Lu H, Shang Z, Wang B, Hu G, Zhao X, Zou Y, Chen A, Gong M, Zhang W, Lee SM, Li S, Liu J, Li Z, Lu Y, Sabir JSM, Sabir MJ, Khan M, Hajrah NH, Yin Y, Kristiansen K, Yang H, Wang J, Xu X, Liu X. Fan G, et al. Among authors: chen j, chen a, chen x. Mol Ecol Resour. 2019 Jul;19(4):944-956. doi: 10.1111/1755-0998.13003. Epub 2019 May 9. Mol Ecol Resour. 2019. PMID: 30735609
Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform.
Li Q, Zhao X, Zhang W, Wang L, Wang J, Xu D, Mei Z, Liu Q, Du S, Li Z, Liang X, Wang X, Wei H, Liu P, Zou J, Shen H, Chen A, Drmanac S, Liu JS, Li L, Jiang H, Zhang Y, Wang J, Yang H, Xu X, Drmanac R, Jiang Y. Li Q, et al. Among authors: chen a. BMC Genomics. 2019 Mar 13;20(1):215. doi: 10.1186/s12864-019-5569-5. BMC Genomics. 2019. PMID: 30866797 Free PMC article.
Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
Wang O, Chin R, Cheng X, Wu MKY, Mao Q, Tang J, Sun Y, Anderson E, Lam HK, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, Zhang RY, Drmanac S, Nguyen D, Xu C, Villarosa C, Gablenz S, Barua N, Nguyen S, Tian W, Liu JS, Wang J, Liu X, Qi X, Chen A, Wang H, Dong Y, Zhang W, Alexeev A, Yang H, Wang J, Kristiansen K, Xu X, Drmanac R, Peters BA. Wang O, et al. Among authors: chen a, chen d. Genome Res. 2019 May;29(5):798-808. doi: 10.1101/gr.245126.118. Epub 2019 Apr 2. Genome Res. 2019. PMID: 30940689 Free PMC article.
An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Liu C, Wang M, Wei X, Wu L, Xu J, Dai X, Xia J, Cheng M, Yuan Y, Zhang P, Li J, Feng T, Chen A, Zhang W, Chen F, Shang Z, Zhang X, Peters BA, Liu L. Liu C, et al. Among authors: chen a, chen f. Sci Data. 2019 May 20;6(1):65. doi: 10.1038/s41597-019-0071-0. Sci Data. 2019. PMID: 31110271 Free PMC article.
Clinical challenges of tissue preparation for spatial transcriptome.
Liu X, Jiang Y, Song D, Zhang L, Xu G, Hou R, Zhang Y, Chen J, Cheng Y, Liu L, Xu X, Chen G, Wu D, Chen T, Chen A, Wang X. Liu X, et al. Among authors: chen j, chen a, chen t, chen g. Clin Transl Med. 2022 Jan;12(1):e669. doi: 10.1002/ctm2.669. Clin Transl Med. 2022. PMID: 35083877 Free PMC article.
Spatial Transcriptome Uncovers the Mouse Lung Architectures and Functions.
Jiang Y, Hao S, Chen X, Cheng M, Xu J, Li C, Zheng H, Volpe G, Chen A, Liao S, Liu C, Liu L, Xu X. Jiang Y, et al. Among authors: chen a, chen x. Front Genet. 2022 Mar 9;13:858808. doi: 10.3389/fgene.2022.858808. eCollection 2022. Front Genet. 2022. PMID: 35391793 Free PMC article. No abstract available.
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