Zhang NR - Search Results

1

The interferon-stimulated gene RIPK1 regulates cancer cell intrinsic and extrinsic resistance to immune checkpoint blockade.

Cucolo L, Chen Q, Qiu J, Yu Y, Klapholz M, Budinich KA, Zhang Z, Shao Y, Brodsky IE, Jordan MS, Gilliland DG, Zhang NR, Shi J, Minn AJ. Cucolo L, et al. Among authors: zhang nr, zhang z. Immunity. 2022 Apr 12;55(4):671-685.e10. doi: 10.1016/j.immuni.2022.03.007. Immunity. 2022. PMID: 35417675 Free PMC article.

2

Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.

Jiang Y, Qiu Y, Minn AJ, Zhang NR. Jiang Y, et al. Among authors: zhang nr. Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):E5528-37. doi: 10.1073/pnas.1522203113. Epub 2016 Aug 29. Proc Natl Acad Sci U S A. 2016. PMID: 27573852 Free PMC article.

3

Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade.

Benci JL, Johnson LR, Choa R, Xu Y, Qiu J, Zhou Z, Xu B, Ye D, Nathanson KL, June CH, Wherry EJ, Zhang NR, Ishwaran H, Hellmann MD, Wolchok JD, Kambayashi T, Minn AJ. Benci JL, et al. Among authors: zhang nr. Cell. 2019 Aug 8;178(4):933-948.e14. doi: 10.1016/j.cell.2019.07.019. Cell. 2019. PMID: 31398344 Free PMC article.

4

DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing.

Zhou Z, Xu B, Minn A, Zhang NR. Zhou Z, et al. Among authors: zhang nr. Genome Biol. 2020 Jan 14;21(1):10. doi: 10.1186/s13059-019-1922-x. Genome Biol. 2020. PMID: 31937348 Free PMC article.

5

Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions.

Jiang Y, Harigaya Y, Zhang Z, Zhang H, Zang C, Zhang NR. Jiang Y, et al. Among authors: zhang nr, zhang z, zhang h. Cell Syst. 2022 Sep 21;13(9):737-751.e4. doi: 10.1016/j.cels.2022.08.004. Epub 2022 Sep 1. Cell Syst. 2022. PMID: 36055233 Free PMC article.

6

Signal recovery in single cell batch integration.

Zhang Z, Mathew D, Lim T, Mason K, Martinez CM, Huang S, Wherry EJ, Susztak K, Minn AJ, Ma Z, Zhang NR. Zhang Z, et al. Among authors: zhang nr. bioRxiv [Preprint]. 2023 Sep 23:2023.05.05.539614. doi: 10.1101/2023.05.05.539614. bioRxiv. 2023. PMID: 37215021 Free PMC article. Preprint.

7

Combined JAK inhibition and PD-1 immunotherapy for non-small cell lung cancer patients.

Mathew D, Marmarelis ME, Foley C, Bauml JM, Ye D, Ghinnagow R, Ngiow SF, Klapholz M, Jun S, Zhang Z, Zorc R, Davis CW, Diehn M, Giles JR, Huang AC, Hwang WT, Zhang NR, Schoenfeld AJ, Carpenter EL, Langer CJ, Wherry EJ, Minn AJ. Mathew D, et al. Among authors: zhang nr. Science. 2024 Jun 21;384(6702):eadf1329. doi: 10.1126/science.adf1329. Epub 2024 Jun 21. Science. 2024. PMID: 38900877 Free PMC article. Clinical Trial.

8

Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer.

Wu CY, Lau BT, Kim HS, Sathe A, Grimes SM, Ji HP, Zhang NR. Wu CY, et al. Among authors: zhang nr. Nat Biotechnol. 2021 Oct;39(10):1259-1269. doi: 10.1038/s41587-021-00911-w. Epub 2021 May 20. Nat Biotechnol. 2021. PMID: 34017141 Free PMC article.

9

Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions.

Mason K, Sathe A, Hess PR, Rong J, Wu CY, Furth E, Susztak K, Levinsohn J, Ji HP, Zhang N. Mason K, et al. Genome Biol. 2024 Jan 12;25(1):14. doi: 10.1186/s13059-023-03159-6. Genome Biol. 2024. PMID: 38217002 Free PMC article.

10

Gene expression distribution deconvolution in single-cell RNA sequencing.

Wang J, Huang M, Torre E, Dueck H, Shaffer S, Murray J, Raj A, Li M, Zhang NR. Wang J, et al. Among authors: zhang nr. Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6437-E6446. doi: 10.1073/pnas.1721085115. Epub 2018 Jun 26. Proc Natl Acad Sci U S A. 2018. PMID: 29946020 Free PMC article.

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