Yang Y - Search Results

1

Common variants contribute to intrinsic human brain functional networks.

Zhao B, Li T, Smith SM, Xiong D, Wang X, Yang Y, Luo T, Zhu Z, Shan Y, Matoba N, Sun Q, Yang Y, Hauberg ME, Bendl J, Fullard JF, Roussos P, Lin W, Li Y, Stein JL, Zhu H. Zhao B, et al. Among authors: yang y. Nat Genet. 2022 Apr;54(4):508-517. doi: 10.1038/s41588-022-01039-6. Epub 2022 Apr 7. Nat Genet. 2022. PMID: 35393594

2

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.

Yang Y, Huh R, Culpepper HW, Lin Y, Love MI, Li Y. Yang Y, et al. Bioinformatics. 2019 Apr 15;35(8):1269-1277. doi: 10.1093/bioinformatics/bty793. Bioinformatics. 2019. PMID: 30202935 Free PMC article.

3

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble.

Huh R, Yang Y, Jiang Y, Shen Y, Li Y. Huh R, et al. Among authors: yang y. Nucleic Acids Res. 2020 Jan 10;48(1):86-95. doi: 10.1093/nar/gkz959. Nucleic Acids Res. 2020. PMID: 31777938 Free PMC article.

4

The circadian clock shapes the Arabidopsis transcriptome by regulating alternative splicing and alternative polyadenylation.

Yang Y, Li Y, Sancar A, Oztas O. Yang Y, et al. J Biol Chem. 2020 May 29;295(22):7608-7619. doi: 10.1074/jbc.RA120.013513. Epub 2020 Apr 17. J Biol Chem. 2020. PMID: 32303634 Free PMC article.

5

SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection.

Yang Y, Li G, Qian H, Wilhelmsen KC, Shen Y, Li Y. Yang Y, et al. Brief Bioinform. 2021 May 20;22(3):bbaa097. doi: 10.1093/bib/bbaa097. Brief Bioinform. 2021. PMID: 32591778 Free PMC article.

6

HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test.

Lagler TM, Abnousi A, Hu M, Yang Y, Li Y. Lagler TM, et al. Among authors: yang y. Am J Hum Genet. 2021 Feb 4;108(2):257-268. doi: 10.1016/j.ajhg.2021.01.009. Am J Hum Genet. 2021. PMID: 33545029 Free PMC article.

7

Super hotspots and super coldspots in the repair of UV-induced DNA damage in the human genome.

Jiang Y, Li W, Lindsey-Boltz LA, Yang Y, Li Y, Sancar A. Jiang Y, et al. Among authors: yang y. J Biol Chem. 2021 Jan-Jun;296:100581. doi: 10.1016/j.jbc.2021.100581. Epub 2021 Mar 23. J Biol Chem. 2021. PMID: 33771559 Free PMC article.

8

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data.

Yu M, Abnousi A, Zhang Y, Li G, Lee L, Chen Z, Fang R, Lagler TM, Yang Y, Wen J, Sun Q, Li Y, Ren B, Hu M. Yu M, et al. Among authors: yang y. Nat Methods. 2021 Sep;18(9):1056-1059. doi: 10.1038/s41592-021-01231-2. Epub 2021 Aug 26. Nat Methods. 2021. PMID: 34446921 Free PMC article.

9

eSCAN: scan regulatory regions for aggregate association testing using whole-genome sequencing data.

Yang Y, Sun Q, Huang L, Broome JG, Correa A, Reiner A; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Raffield LM, Yang Y, Li Y. Yang Y, et al. Brief Bioinform. 2022 Jan 17;23(1):bbab497. doi: 10.1093/bib/bbab497. Brief Bioinform. 2022. PMID: 34882196 Free PMC article.

10

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types.

Wen J, Lagler TM, Sun Q, Yang Y, Chen J, Harigaya Y, Sankaran VG, Hu M, Reiner AP, Raffield LM, Li Y. Wen J, et al. Among authors: yang y. PLoS Genet. 2022 Jan 31;18(1):e1009984. doi: 10.1371/journal.pgen.1009984. eCollection 2022 Jan. PLoS Genet. 2022. PMID: 35100265 Free PMC article.

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