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System-wide transcriptome damage and tissue identity loss in COVID-19 patients.
Park J, Foox J, Hether T, Danko DC, Warren S, Kim Y, Reeves J, Butler DJ, Mozsary C, Rosiene J, Shaiber A, Afshin EE, MacKay M, Rendeiro AF, Bram Y, Chandar V, Geiger H, Craney A, Velu P, Melnick AM, Hajirasouliha I, Beheshti A, Taylor D, Saravia-Butler A, Singh U, Wurtele ES, Schisler J, Fennessey S, Corvelo A, Zody MC, Germer S, Salvatore S, Levy S, Wu S, Tatonetti NP, Shapira S, Salvatore M, Westblade LF, Cushing M, Rennert H, Kriegel AJ, Elemento O, Imielinski M, Rice CM, Borczuk AC, Meydan C, Schwartz RE, Mason CE. Park J, et al. Among authors: singh u. Cell Rep Med. 2022 Jan 24;3(2):100522. doi: 10.1016/j.xcrm.2022.100522. eCollection 2022 Feb 15. Cell Rep Med. 2022. PMID: 35233546 Free PMC article.
phylostratr: a framework for phylostratigraphy.
Arendsee Z, Li J, Singh U, Seetharam A, Dorman K, Wurtele ES. Arendsee Z, et al. Among authors: singh u. Bioinformatics. 2019 Oct 1;35(19):3617-3627. doi: 10.1093/bioinformatics/btz171. Bioinformatics. 2019. PMID: 30873536
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.
Park J, Foox J, Hether T, Danko D, Warren S, Kim Y, Reeves J, Butler DJ, Mozsary C, Rosiene J, Shaiber A, Afshinnekoo E, MacKay M, Bram Y, Chandar V, Geiger H, Craney A, Velu P, Melnick AM, Hajirasouliha I, Beheshti A, Taylor D, Saravia-Butler A, Singh U, Wurtele ES, Schisler J, Fennessey S, Corvelo A, Zody MC, Germer S, Salvatore S, Levy S, Wu S, Tatonetti N, Shapira S, Salvatore M, Loda M, Westblade LF, Cushing M, Rennert H, Kriegel AJ, Elemento O, Imielinski M, Borczuk AC, Meydan C, Schwartz RE, Mason CE. Park J, et al. Among authors: singh u. bioRxiv [Preprint]. 2021 Mar 9:2021.03.08.434433. doi: 10.1101/2021.03.08.434433. bioRxiv. 2021. PMID: 33758858 Free PMC article. Preprint.
The Great Deceiver: miR-2392's Hidden Role in Driving SARS-CoV-2 Infection.
McDonald JT, Enguita FJ, Taylor D, Griffin RJ, Priebe W, Emmett MR, Sajadi MM, Harris AD, Clement J, Dybas JM, Aykin-Burns N, Guarnieri JW, Singh LN, Grabham P, Baylin SB, Yousey A, Pearson AN, Corry PM, Saravia-Butler A, Aunins TR, Sharma S, Nagpal P, Meydan C, Foox J, Mozsary C, Cerqueira B, Zaksas V, Singh U, Wurtele ES, Costes SV, Davanzo GG, Galeano D, Paccanaro A, Meinig SL, Hagan RS, Bowman NM; UNC COVID-19 Pathobiology Consortium; Wolfgang MC, Altinok S, Sapoval N, Treangen TJ, Moraes-Vieira PM, Vanderburg C, Wallace DC, Schisler J, Mason CE, Chatterjee A, Meller R, Beheshti A. McDonald JT, et al. Among authors: singh u, singh ln. bioRxiv [Preprint]. 2021 Aug 18:2021.04.23.441024. doi: 10.1101/2021.04.23.441024. bioRxiv. 2021. Update in: Cell Rep. 2021 Oct 19;37(3):109839. doi: 10.1016/j.celrep.2021.109839. PMID: 33948587 Free PMC article. Updated. Preprint.
pyrpipe: a Python package for RNA-Seq workflows.
Singh U, Li J, Seetharam A, Wurtele ES. Singh U, et al. NAR Genom Bioinform. 2021 Jun 1;3(2):lqab049. doi: 10.1093/nargab/lqab049. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 34085037 Free PMC article.
2,213 results