Park PJ - Search Results

1

Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs.

Lee S, Bakker CR, Vitzthum C, Alver BH, Park PJ. Lee S, et al. Among authors: park pj. Bioinformatics. 2022 Mar 4;38(6):1729-1731. doi: 10.1093/bioinformatics/btab870. Bioinformatics. 2022. PMID: 34978573 Free PMC article.

2

A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs.

Choi J, Lee S, Mallard W, Clement K, Tagliazucchi GM, Lim H, Choi IY, Ferrari F, Tsankov AM, Pop R, Lee G, Rinn JL, Meissner A, Park PJ, Hochedlinger K. Choi J, et al. Among authors: park pj. Nat Biotechnol. 2015 Nov;33(11):1173-81. doi: 10.1038/nbt.3388. Epub 2015 Oct 26. Nat Biotechnol. 2015. PMID: 26501951 Free PMC article.

3

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility.

Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY. Mieczkowski J, et al. Among authors: park pj. Nat Commun. 2016 May 6;7:11485. doi: 10.1038/ncomms11485. Nat Commun. 2016. PMID: 27151365 Free PMC article.

4

SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation.

Wang X, Lee RS, Alver BH, Haswell JR, Wang S, Mieczkowski J, Drier Y, Gillespie SM, Archer TC, Wu JN, Tzvetkov EP, Troisi EC, Pomeroy SL, Biegel JA, Tolstorukov MY, Bernstein BE, Park PJ, Roberts CW. Wang X, et al. Among authors: park pj. Nat Genet. 2017 Feb;49(2):289-295. doi: 10.1038/ng.3746. Epub 2016 Dec 12. Nat Genet. 2017. PMID: 27941797 Free PMC article.

5

ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.

Mathur R, Alver BH, San Roman AK, Wilson BG, Wang X, Agoston AT, Park PJ, Shivdasani RA, Roberts CW. Mathur R, et al. Among authors: park pj. Nat Genet. 2017 Feb;49(2):296-302. doi: 10.1038/ng.3744. Epub 2016 Dec 12. Nat Genet. 2017. PMID: 27941798 Free PMC article.

6

The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers.

Alver BH, Kim KH, Lu P, Wang X, Manchester HE, Wang W, Haswell JR, Park PJ, Roberts CW. Alver BH, et al. Among authors: park pj. Nat Commun. 2017 Mar 6;8:14648. doi: 10.1038/ncomms14648. Nat Commun. 2017. PMID: 28262751 Free PMC article.

7

Aging and neurodegeneration are associated with increased mutations in single human neurons.

Lodato MA, Rodin RE, Bohrson CL, Coulter ME, Barton AR, Kwon M, Sherman MA, Vitzthum CM, Luquette LJ, Yandava CN, Yang P, Chittenden TW, Hatem NE, Ryu SC, Woodworth MB, Park PJ, Walsh CA. Lodato MA, et al. Among authors: park pj. Science. 2018 Feb 2;359(6375):555-559. doi: 10.1126/science.aao4426. Epub 2017 Dec 7. Science. 2018. PMID: 29217584 Free PMC article.

8

HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.

Wang S, Lee S, Chu C, Jain D, Kerpedjiev P, Nelson GM, Walsh JM, Alver BH, Park PJ. Wang S, et al. Among authors: park pj. Genome Biol. 2020 Mar 23;21(1):73. doi: 10.1186/s13059-020-01986-5. Genome Biol. 2020. PMID: 32293513 Free PMC article.

9

The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae.

Reim NI, Chuang J, Jain D, Alver BH, Park PJ, Winston F. Reim NI, et al. Among authors: park pj. Nucleic Acids Res. 2020 Oct 9;48(18):10241-10258. doi: 10.1093/nar/gkaa745. Nucleic Acids Res. 2020. PMID: 32941642 Free PMC article.

10

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.

Jain D, Chu C, Alver BH, Lee S, Lee EA, Park PJ. Jain D, et al. Among authors: park pj. Bioinformatics. 2021 May 23;37(8):1045-1051. doi: 10.1093/bioinformatics/btaa923. Bioinformatics. 2021. PMID: 33136153 Free PMC article.

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