Swaney DL - Search Results

1

Interpretation of cancer mutations using a multiscale map of protein systems.

Zheng F, Kelly MR, Ramms DJ, Heintschel ML, Tao K, Tutuncuoglu B, Lee JJ, Ono K, Foussard H, Chen M, Herrington KA, Silva E, Liu SN, Chen J, Churas C, Wilson N, Kratz A, Pillich RT, Patel DN, Park J, Kuenzi B, Yu MK, Licon K, Pratt D, Kreisberg JF, Kim M, Swaney DL, Nan X, Fraley SI, Gutkind JS, Krogan NJ, Ideker T. Zheng F, et al. Among authors: swaney dl. Science. 2021 Oct;374(6563):eabf3067. doi: 10.1126/science.abf3067. Epub 2021 Oct 1. Science. 2021. PMID: 34591613 Free PMC article.

2

Multi-scale photocatalytic proximity labeling reveals cell surface neighbors on and between cells.

Lin Z, Schaefer K, Lui I, Yao Z, Fossati A, Swaney DL, Palar A, Sali A, Wells JA. Lin Z, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Oct 29:2023.10.28.564055. doi: 10.1101/2023.10.28.564055. bioRxiv. 2023. Update in: Science. 2024 Jul 19;385(6706):eadl5763. doi: 10.1126/science.adl5763. PMID: 37961561 Free PMC article. Updated. Preprint.

3

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.

Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC. Wilburn DB, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Jun 2:2023.05.30.542978. doi: 10.1101/2023.05.30.542978. bioRxiv. 2023. PMID: 37398395 Free PMC article. Preprint.

4

Systematic functional prioritization of protein posttranslational modifications.

Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ. Beltrao P, et al. Among authors: swaney dl. Cell. 2012 Jul 20;150(2):413-25. doi: 10.1016/j.cell.2012.05.036. Cell. 2012. PMID: 22817900 Free PMC article.

5

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.

Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, Villén J. Swaney DL, et al. Nat Methods. 2013 Jul;10(7):676-82. doi: 10.1038/nmeth.2519. Epub 2013 Jun 9. Nat Methods. 2013. PMID: 23749301 Free PMC article.

6

Proteome Imbalance of Mitochondrial Electron Transport Chain in Brown Adipocytes Leads to Metabolic Benefits.

Masand R, Paulo E, Wu D, Wang Y, Swaney DL, Jimenez-Morales D, Krogan NJ, Wang B. Masand R, et al. Among authors: swaney dl. Cell Metab. 2018 Mar 6;27(3):616-629.e4. doi: 10.1016/j.cmet.2018.01.018. Cell Metab. 2018. PMID: 29514069 Free PMC article.

7

Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis.

Paulo E, Wu D, Wang Y, Zhang Y, Wu Y, Swaney DL, Soucheray M, Jimenez-Morales D, Chawla A, Krogan NJ, Wang B. Paulo E, et al. Among authors: swaney dl. Sci Rep. 2018 Jul 20;8(1):11001. doi: 10.1038/s41598-018-29333-6. Sci Rep. 2018. PMID: 30030465 Free PMC article.

8

Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.

Eckhardt M, Zhang W, Gross AM, Von Dollen J, Johnson JR, Franks-Skiba KE, Swaney DL, Johnson TL, Jang GM, Shah PS, Brand TM, Archambault J, Kreisberg JF, Grandis JR, Ideker T, Krogan NJ. Eckhardt M, et al. Among authors: swaney dl. Cancer Discov. 2018 Nov;8(11):1474-1489. doi: 10.1158/2159-8290.CD-17-1018. Epub 2018 Sep 12. Cancer Discov. 2018. PMID: 30209081 Free PMC article.

9

Comparative Flavivirus-Host Protein Interaction Mapping Reveals Mechanisms of Dengue and Zika Virus Pathogenesis.

Shah PS, Link N, Jang GM, Sharp PP, Zhu T, Swaney DL, Johnson JR, Von Dollen J, Ramage HR, Satkamp L, Newton B, Hüttenhain R, Petit MJ, Baum T, Everitt A, Laufman O, Tassetto M, Shales M, Stevenson E, Iglesias GN, Shokat L, Tripathi S, Balasubramaniam V, Webb LG, Aguirre S, Willsey AJ, Garcia-Sastre A, Pollard KS, Cherry S, Gamarnik AV, Marazzi I, Taunton J, Fernandez-Sesma A, Bellen HJ, Andino R, Krogan NJ. Shah PS, et al. Among authors: swaney dl. Cell. 2018 Dec 13;175(7):1931-1945.e18. doi: 10.1016/j.cell.2018.11.028. Cell. 2018. PMID: 30550790 Free PMC article.

10

TCO, a Putative Transcriptional Regulator in Arabidopsis, Is a Target of the Protein Kinase CK2.

Weinman LM, Running KLD, Carey NS, Stevenson EJ, Swaney DL, Chow BY, Krogan NJ, Krogan NT. Weinman LM, et al. Among authors: swaney dl. Int J Mol Sci. 2018 Dec 28;20(1):99. doi: 10.3390/ijms20010099. Int J Mol Sci. 2018. PMID: 30597831 Free PMC article.

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