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Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic.
Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, Alfaro Alvarado LH, Catalfano K, Khan A, McCarthy E, Staggers S, Tinsley B, Trudeau A, Singh J, Whitmore L, Zheng H, Benedek M, Currier J, Dresel M, Duvvuru A, Dyszel B, Fingar E, Hennen EM, Kirsch M, Khan AA, Labrie-Cleary C, Laporte S, Lenkeit E, Martin K, Orellana M, Ortiz-Alvarez de la Campa M, Paredes I, Wheeler B, Rupert A, Sam A, See K, Soto Zapata S, Craig PA, Hall BL, Jiang J, Koeppe JR, Mills SA, Pikaart MJ, Roberts R, Bromberg Y, Hoyer JS, Duffy S, Tischfield J, Ruiz FX, Arnold E, Baum J, Sandberg J, Brannigan G, Khare SD, Burley SK. Lubin JH, et al. Among authors: dutta s. Proteins. 2022 May;90(5):1054-1080. doi: 10.1002/prot.26250. Epub 2021 Oct 9. Proteins. 2022. PMID: 34580920 Free PMC article.
Representation of viruses in the remediated PDB archive.
Lawson CL, Dutta S, Westbrook JD, Henrick K, Berman HM. Lawson CL, et al. Among authors: dutta s. Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):874-82. doi: 10.1107/S0907444908017393. Epub 2008 Jul 17. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18645236 Free PMC article.
The RCSB Protein Data Bank: new resources for research and education.
Rose PW, Bi C, Bluhm WF, Christie CH, Dimitropoulos D, Dutta S, Green RK, Goodsell DS, Prlic A, Quesada M, Quinn GB, Ramos AG, Westbrook JD, Young J, Zardecki C, Berman HM, Bourne PE. Rose PW, et al. Among authors: dutta s. Nucleic Acids Res. 2013 Jan;41(Database issue):D475-82. doi: 10.1093/nar/gks1200. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193259 Free PMC article.
Trendspotting in the Protein Data Bank.
Berman HM, Coimbatore Narayanan B, Di Costanzo L, Dutta S, Ghosh S, Hudson BP, Lawson CL, Peisach E, Prlić A, Rose PW, Shao C, Yang H, Young J, Zardecki C. Berman HM, et al. Among authors: dutta s. FEBS Lett. 2013 Apr 17;587(8):1036-45. doi: 10.1016/j.febslet.2012.12.029. Epub 2013 Jan 18. FEBS Lett. 2013. PMID: 23337870 Free PMC article. Review.
The RCSB protein data bank: integrative view of protein, gene and 3D structural information.
Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK. Rose PW, et al. Among authors: dutta s. Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27. Nucleic Acids Res. 2017. PMID: 27794042 Free PMC article.
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.
Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, Guzenko D, Hudson BP, Kalro T, Liang Y, Lowe R, Namkoong H, Peisach E, Periskova I, Prlic A, Randle C, Rose A, Rose P, Sala R, Sekharan M, Shao C, Tan L, Tao YP, Valasatava Y, Voigt M, Westbrook J, Woo J, Yang H, Young J, Zhuravleva M, Zardecki C. Burley SK, et al. Among authors: dutta s. Nucleic Acids Res. 2019 Jan 8;47(D1):D464-D474. doi: 10.1093/nar/gky1004. Nucleic Acids Res. 2019. PMID: 30357411 Free PMC article.
4,460 results