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Enabling personal genomics with an explicit test of epistasis.
Greene CS, Himmelstein DS, Nelson HH, Kelsey KT, Williams SM, Andrew AS, Karagas MR, Moore JH. Greene CS, et al. Pac Symp Biocomput. 2010:327-36. doi: 10.1142/9789814295291_0035. Pac Symp Biocomput. 2010. PMID: 19908385 Free PMC article.
Understanding multicellular function and disease with human tissue-specific networks.
Greene CS, Krishnan A, Wong AK, Ricciotti E, Zelaya RA, Himmelstein DS, Zhang R, Hartmann BM, Zaslavsky E, Sealfon SC, Chasman DI, FitzGerald GA, Dolinski K, Grosser T, Troyanskaya OG. Greene CS, et al. Nat Genet. 2015 Jun;47(6):569-76. doi: 10.1038/ng.3259. Epub 2015 Apr 27. Nat Genet. 2015. PMID: 25915600 Free PMC article.
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Himmelstein DS, Romero AR, Levernier JG, Munro TA, McLaughlin SR, Greshake Tzovaras B, Greene CS. Himmelstein DS, et al. Among authors: greene cs. Elife. 2018 Mar 1;7:e32822. doi: 10.7554/eLife.32822. Elife. 2018. PMID: 29424689 Free PMC article.
Opportunities and obstacles for deep learning in biology and medicine.
Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS. Ching T, et al. Among authors: greene cs. J R Soc Interface. 2018 Apr;15(141):20170387. doi: 10.1098/rsif.2017.0387. J R Soc Interface. 2018. PMID: 29618526 Free PMC article. Review.
Open collaborative writing with Manubot.
Himmelstein DS, Rubinetti V, Slochower DR, Hu D, Malladi VS, Greene CS, Gitter A. Himmelstein DS, et al. Among authors: greene cs. PLoS Comput Biol. 2019 Jun 24;15(6):e1007128. doi: 10.1371/journal.pcbi.1007128. eCollection 2019 Jun. PLoS Comput Biol. 2019. PMID: 31233491 Free PMC article.
311 results