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Federated learning for predicting clinical outcomes in patients with COVID-19.
Dayan I, Roth HR, Zhong A, Harouni A, Gentili A, Abidin AZ, Liu A, Costa AB, Wood BJ, Tsai CS, Wang CH, Hsu CN, Lee CK, Ruan P, Xu D, Wu D, Huang E, Kitamura FC, Lacey G, de Antônio Corradi GC, Nino G, Shin HH, Obinata H, Ren H, Crane JC, Tetreault J, Guan J, Garrett JW, Kaggie JD, Park JG, Dreyer K, Juluru K, Kersten K, Rockenbach MABC, Linguraru MG, Haider MA, AbdelMaseeh M, Rieke N, Damasceno PF, E Silva PMC, Wang P, Xu S, Kawano S, Sriswasdi S, Park SY, Grist TM, Buch V, Jantarabenjakul W, Wang W, Tak WY, Li X, Lin X, Kwon YJ, Quraini A, Feng A, Priest AN, Turkbey B, Glicksberg B, Bizzo B, Kim BS, Tor-Díez C, Lee CC, Hsu CJ, Lin C, Lai CL, Hess CP, Compas C, Bhatia D, Oermann EK, Leibovitz E, Sasaki H, Mori H, Yang I, Sohn JH, Murthy KNK, Fu LC, de Mendonça MRF, Fralick M, Kang MK, Adil M, Gangai N, Vateekul P, Elnajjar P, Hickman S, Majumdar S, McLeod SL, Reed S, Gräf S, Harmon S, Kodama T, Puthanakit T, Mazzulli T, de Lavor VL, Rakvongthai Y, Lee YR, Wen Y, Gilbert FJ, Flores MG, Li Q. Dayan I, et al. Among authors: li x, li q. Nat Med. 2021 Oct;27(10):1735-1743. doi: 10.1038/s41591-021-01506-3. Epub 2021 Sep 15. Nat Med. 2021. PMID: 34526699 Free PMC article.
Federated Learning used for predicting outcomes in SARS-COV-2 patients.
Flores M, Dayan I, Roth H, Zhong A, Harouni A, Gentili A, Abidin A, Liu A, Costa A, Wood B, Tsai CS, Wang CH, Hsu CN, Lee CK, Ruan C, Xu D, Wu D, Huang E, Kitamura F, Lacey G, César de Antônio Corradi G, Shin HH, Obinata H, Ren H, Crane J, Tetreault J, Guan J, Garrett J, Park JG, Dreyer K, Juluru K, Kersten K, Bezerra Cavalcanti Rockenbach MA, Linguraru M, Haider M, AbdelMaseeh M, Rieke N, Damasceno P, Cruz E Silva PM, Wang P, Xu S, Kawano S, Sriswasdi S, Park SY, Grist T, Buch V, Jantarabenjakul W, Wang W, Tak WY, Li X, Lin X, Kwon F, Gilbert F, Kaggie J, Li Q, Quraini A, Feng A, Priest A, Turkbey B, Glicksberg B, Bizzo B, Kim BS, Tor-Diez C, Lee CC, Hsu CJ, Lin C, Lai CL, Hess C, Compas C, Bhatia D, Oermann E, Leibovitz E, Sasaki H, Mori H, Yang I, Sohn JH, Keshava Murthy KN, Fu LC, Furtado de Mendonça MR, Fralick M, Kang MK, Adil M, Gangai N, Vateekul P, Elnajjar P, Hickman S, Majumdar S, McLeod S, Reed S, Graf S, Harmon S, Kodama T, Puthanakit T, Mazzulli T, de Lima Lavor V, Rakvongthai Y, Lee YR, Wen Y. Flores M, et al. Among authors: li x, li q. Res Sq [Preprint]. 2021 Jan 8:rs.3.rs-126892. doi: 10.21203/rs.3.rs-126892/v1. Res Sq. 2021. Update in: Nat Med. 2021 Oct;27(10):1735-1743. doi: 10.1038/s41591-021-01506-3 PMID: 33442676 Free PMC article. Updated. Preprint.
Deep metric learning-based image retrieval system for chest radiograph and its clinical applications in COVID-19.
Zhong A, Li X, Wu D, Ren H, Kim K, Kim Y, Buch V, Neumark N, Bizzo B, Tak WY, Park SY, Lee YR, Kang MK, Park JG, Kim BS, Chung WJ, Guo N, Dayan I, Kalra MK, Li Q. Zhong A, et al. Among authors: li x, li q. Med Image Anal. 2021 May;70:101993. doi: 10.1016/j.media.2021.101993. Epub 2021 Feb 7. Med Image Anal. 2021. PMID: 33711739 Free PMC article.
A generalist vision-language foundation model for diverse biomedical tasks.
Zhang K, Zhou R, Adhikarla E, Yan Z, Liu Y, Yu J, Liu Z, Chen X, Davison BD, Ren H, Huang J, Chen C, Zhou Y, Fu S, Liu W, Liu T, Li X, Chen Y, He L, Zou J, Li Q, Liu H, Sun L. Zhang K, et al. Among authors: li x, li q. Nat Med. 2024 Nov;30(11):3129-3141. doi: 10.1038/s41591-024-03185-2. Epub 2024 Aug 7. Nat Med. 2024. PMID: 39112796
BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J, Radojević M, Zhao T, Cheng L, Qu L, Liu S, Bouchard KE, Gu L, Cai W, Ji S, Roysam B, Wang CW, Yu H, Sironi A, Iascone DM, Zhou J, Bas E, Conde-Sousa E, Aguiar P, Li X, Li Y, Nanda S, Wang Y, Muresan L, Fua P, Ye B, He HY, Staiger JF, Peter M, Cox DN, Simonneau M, Oberlaender M, Jefferis G, Ito K, Gonzalez-Bellido P, Kim J, Rubel E, Cline HT, Zeng H, Nern A, Chiang AS, Yao J, Roskams J, Livesey R, Stevens J, Liu T, Dang C, Guo Y, Zhong N, Tourassi G, Hill S, Hawrylycz M, Koch C, Meijering E, Ascoli GA, Peng H. Manubens-Gil L, et al. Among authors: li y, li x. Nat Methods. 2023 Jun;20(6):824-835. doi: 10.1038/s41592-023-01848-5. Epub 2023 Apr 17. Nat Methods. 2023. PMID: 37069271
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