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Page 1
Analysis of Powassan Virus Genome Sequences from Human Cases Reveals Substantial Genetic Diversity with Implications for Molecular Assay Development.
Klontz EH, Chowdhury N, Holbrook N, Solomon IH, Telford SR 3rd, Aliota MT, Vogels CBF, Grubaugh ND, Helgager J, Hughes HR, Velez J, Piantadosi A, Chiu CY, Lemieux J, Branda JA. Klontz EH, et al. Among authors: grubaugh nd. Viruses. 2024 Oct 23;16(11):1653. doi: 10.3390/v16111653. Viruses. 2024. PMID: 39599768 Free PMC article.
Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.
Li K, Chaguza C, Stamp J, Chew YT, Chen NFG, Ferguson D, Pandya S, Kerantzas N, Schulz W; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hahn AM, Ogbunugafor CB, Pitzer VE, Crawford L, Weinberger DM, Grubaugh ND. Li K, et al. Among authors: grubaugh nd. PLoS Comput Biol. 2024 Sep 17;20(9):e1012469. doi: 10.1371/journal.pcbi.1012469. eCollection 2024 Sep. PLoS Comput Biol. 2024. PMID: 39288189 Free PMC article.
A new lineage nomenclature to aid genomic surveillance of dengue virus.
Hill V, Cleemput S, Pereira JS, Gifford RJ, Fonseca V, Tegally H, Brito AF, Ribeiro G, de Souza VC, Brcko IC, Ribeiro IS, De Lima ITT, Slavov SN, Sampaio SC, Elias MC, Tran VT, Kien DTH, Huynh T, Yacoub S, Dieng I, Salvato R, Wallau GL, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, Lima ARJ, Oliveira T, Grubaugh ND. Hill V, et al. Among authors: grubaugh nd. PLoS Biol. 2024 Sep 16;22(9):e3002834. doi: 10.1371/journal.pbio.3002834. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39283942 Free PMC article.
North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic.
Miguel I, Feliz EP, Agramonte R, Martinez PV, Vergara C, Imbert Y, De la Cruz L, de Castro N, Cedano O, De la Paz Y, Fonseca V, Santiago GA, Muñoz-Jordán JL, Peguero A, Paulino-Ramírez R, Grubaugh ND, de Filippis AMB, Alcantara LCJ, Rico JM, Lourenço J, Franco L, Giovanetti M. Miguel I, et al. Among authors: grubaugh nd. BMC Infect Dis. 2024 Jul 29;24(1):751. doi: 10.1186/s12879-024-09658-6. BMC Infect Dis. 2024. PMID: 39075335 Free PMC article.
SARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity.
Peña-Hernández MA, Alfajaro MM, Filler RB, Moriyama M, Keeler EL, Ranglin ZE, Kong Y, Mao T, Menasche BL, Mankowski MC, Zhao Z, Vogels CBF, Hahn AM, Kalinich CC, Zhang S, Huston N, Wan H, Araujo-Tavares R, Lindenbach BD, Homer R, Pyle AM, Martinez DR, Grubaugh ND, Israelow B, Iwasaki A, Wilen CB. Peña-Hernández MA, et al. Among authors: grubaugh nd. Nat Microbiol. 2024 Aug;9(8):2038-2050. doi: 10.1038/s41564-024-01765-z. Epub 2024 Jul 29. Nat Microbiol. 2024. PMID: 39075235
2023-24 dengue outbreak in Valle del Cauca, Colombia caused by multiple virus serotypes and lineages.
Grubaugh ND, Torres-Hernández D, Murillo-Ortiz MA, Dávalos DM, Lopez P, Hurtado IC, Breban MI, Bourgikos E, Hill V, López-Medina E. Grubaugh ND, et al. medRxiv [Preprint]. 2024 Jul 18:2024.07.16.24310413. doi: 10.1101/2024.07.16.24310413. medRxiv. 2024. Update in: Emerg Infect Dis. 2024 Nov;30(11):2391-2395. doi: 10.3201/eid3011.241031 PMID: 39072046 Free PMC article. Updated. Preprint.
A new lineage nomenclature to aid genomic surveillance of dengue virus.
Hill V, Cleemput S, Fonseca V, Tegally H, Brito AF, Gifford R, Tran VT, Kien DTH, Huynh T, Yacoub S, Dieng I, Ndiaye M, Balde D, Diagne MM, Faye O, Salvato R, Wallau GL, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, de Oliveira T, Grubaugh ND. Hill V, et al. Among authors: grubaugh nd. medRxiv [Preprint]. 2024 May 17:2024.05.16.24307504. doi: 10.1101/2024.05.16.24307504. medRxiv. 2024. Update in: PLoS Biol. 2024 Sep 16;22(9):e3002834. doi: 10.1371/journal.pbio.3002834 PMID: 38798319 Free PMC article. Updated. Preprint.
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.
Vogels CBF, Hill V, Breban MI, Chaguza C, Paul LM, Sodeinde A, Taylor-Salmon E, Ott IM, Petrone ME, Dijk D, Jonges M, Welkers MRA, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Herzog KS, Fauver JR, Morrison AM, Michael SF, Grubaugh ND. Vogels CBF, et al. Among authors: grubaugh nd. BMC Genomics. 2024 May 1;25(1):433. doi: 10.1186/s12864-024-10350-x. BMC Genomics. 2024. PMID: 38693476 Free PMC article.
182 results