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Page 1
Centering inclusivity in the design of online conferences-An OHBM-Open Science perspective.
Levitis E, van Praag CDG, Gau R, Heunis S, DuPre E, Kiar G, Bottenhorn KL, Glatard T, Nikolaidis A, Whitaker KJ, Mancini M, Niso G, Afyouni S, Alonso-Ortiz E, Appelhoff S, Arnatkeviciute A, Atay SM, Auer T, Baracchini G, Bayer JMM, Beauvais MJS, Bijsterbosch JD, Bilgin IP, Bollmann S, Bollmann S, Botvinik-Nezer R, Bright MG, Calhoun VD, Chen X, Chopra S, Chuan-Peng H, Close TG, Cookson SL, Craddock RC, De La Vega A, De Leener B, Demeter DV, Di Maio P, Dickie EW, Eickhoff SB, Esteban O, Finc K, Frigo M, Ganesan S, Ganz M, Garner KG, Garza-Villarreal EA, Gonzalez-Escamilla G, Goswami R, Griffiths JD, Grootswagers T, Guay S, Guest O, Handwerker DA, Herholz P, Heuer K, Huijser DC, Iacovella V, Joseph MJE, Karakuzu A, Keator DB, Kobeleva X, Kumar M, Laird AR, Larson-Prior LJ, Lautarescu A, Lazari A, Legarreta JH, Li XY, Lv J, Mansour L S, Meunier D, Moraczewski D, Nandi T, Nastase SA, Nau M, Noble S, Norgaard M, Obungoloch J, Oostenveld R, Orchard ER, Pinho AL, Poldrack RA, Qiu A, Raamana PR, Rokem A, Rutherford S, Sharan M, Shaw TB, Syeda WT, Testerman MM, Toro R, Valk SL, Van Den Bossche S, Varoquaux G, Váša F, Veldsman M, Vohryzek J, Wagner AS, Walsh RJ, White T, Wong FT, Xie… See abstract for full author list ➔ Levitis E, et al. Among authors: dupre e. Gigascience. 2021 Aug 20;10(8):giab051. doi: 10.1093/gigascience/giab051. Gigascience. 2021. PMID: 34414422 Free PMC article.
fMRIPrep: a robust preprocessing pipeline for functional MRI.
Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, Kent JD, Goncalves M, DuPre E, Snyder M, Oya H, Ghosh SS, Wright J, Durnez J, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: dupre e. Nat Methods. 2019 Jan;16(1):111-116. doi: 10.1038/s41592-018-0235-4. Epub 2018 Dec 10. Nat Methods. 2019. PMID: 30532080 Free PMC article.
Analysis of task-based functional MRI data preprocessed with fMRIPrep.
Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DEP, Ye Z, Salo T, Valabregue R, Amlien IK, Liem F, Jacoby N, Stojić H, Cieslak M, Urchs S, Halchenko YO, Ghosh SS, De La Vega A, Yarkoni T, Wright J, Thompson WH, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: dupre e. Nat Protoc. 2020 Jul;15(7):2186-2202. doi: 10.1038/s41596-020-0327-3. Epub 2020 Jun 8. Nat Protoc. 2020. PMID: 32514178 Free PMC article.
PyBIDS: Python tools for BIDS datasets.
Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, Salo T, Halchenko YO, McNamara Q, DeStasio K, Poline JB, Petrov D, Hayot-Sasson V, Nielson DM, Carlin J, Kiar G, Whitaker K, DuPre E, Wagner A, Tirrell LS, Jas M, Hanke M, Poldrack RA, Esteban O, Appelhoff S, Holdgraf C, Staden I, Thirion B, Kleinschmidt DF, Lee JA, Visconti di Oleggio Castello M, Notter MP, Blair R. Yarkoni T, et al. Among authors: dupre e. J Open Source Softw. 2019;4(40):1294. doi: 10.21105/joss.01294. Epub 2019 Aug 12. J Open Source Softw. 2019. PMID: 32775955 Free PMC article. No abstract available.
Embracing diversity and inclusivity in an academic setting: Insights from the Organization for Human Brain Mapping.
Tzovara A, Amarreh I, Borghesani V, Chakravarty MM, DuPre E, Grefkes C, Haugg A, Jollans L, Lee HW, Newman SD, Olsen RK, Ratnanather JT, Rippon G, Uddin LQ, Vega MLB, Veldsman M, White T, Badhwar A. Tzovara A, et al. Among authors: dupre e. Neuroimage. 2021 Apr 1;229:117742. doi: 10.1016/j.neuroimage.2021.117742. Epub 2021 Jan 14. Neuroimage. 2021. PMID: 33454405 Free article. Review.
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience.
Gau R, Noble S, Heuer K, Bottenhorn KL, Bilgin IP, Yang YF, Huntenburg JM, Bayer JMM, Bethlehem RAI, Rhoads SA, Vogelbacher C, Borghesani V, Levitis E, Wang HT, Van Den Bossche S, Kobeleva X, Legarreta JH, Guay S, Atay SM, Varoquaux GP, Huijser DC, Sandström MS, Herholz P, Nastase SA, Badhwar A, Dumas G, Schwab S, Moia S, Dayan M, Bassil Y, Brooks PP, Mancini M, Shine JM, O'Connor D, Xie X, Poggiali D, Friedrich P, Heinsfeld AS, Riedl L, Toro R, Caballero-Gaudes C, Eklund A, Garner KG, Nolan CR, Demeter DV, Barrios FA, Merchant JS, McDevitt EA, Oostenveld R, Craddock RC, Rokem A, Doyle A, Ghosh SS, Nikolaidis A, Stanley OW, Uruñuela E; Brainhack Community. Gau R, et al. Neuron. 2021 Jun 2;109(11):1769-1775. doi: 10.1016/j.neuron.2021.04.001. Epub 2021 Apr 30. Neuron. 2021. PMID: 33932337 Free PMC article.
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).
Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thi… See abstract for full author list ➔ Poldrack RA, et al. Among authors: dupre e. ArXiv [Preprint]. 2024 Jan 9:arXiv:2309.05768v2. ArXiv. 2024. Update in: Imaging Neurosci (Camb). 2024 Mar 08;2:1-19. doi: 10.1162/imag_a_00103. PMID: 37744469 Free PMC article. Updated. Preprint.
The past, present, and future of the brain imaging data structure (BIDS).
Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thi… See abstract for full author list ➔ Poldrack RA, et al. Among authors: dupre e. Imaging Neurosci (Camb). 2024 Mar 8;2:1-19. doi: 10.1162/imag_a_00103. eCollection 2024 Mar 1. Imaging Neurosci (Camb). 2024. PMID: 39308505 Free PMC article. Review.
72 results