Hu J - Search Results

1

Statistical and machine learning methods for spatially resolved transcriptomics with histology.

Hu J, Schroeder A, Coleman K, Chen C, Auerbach BJ, Li M. Hu J, et al. Comput Struct Biotechnol J. 2021 Jul 1;19:3829-3841. doi: 10.1016/j.csbj.2021.06.052. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34285782 Free PMC article. Review.

2

PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.

Hu Y, Lin J, Hu J, Hu G, Wang K, Zhang H, Reilly MP, Li M. Hu Y, et al. Among authors: hu g, hu j. Bioinformatics. 2018 Jul 15;34(14):2384-2391. doi: 10.1093/bioinformatics/bty097. Bioinformatics. 2018. PMID: 29474557 Free PMC article.

3

ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing.

Fan J, Hu J, Xue C, Zhang H, Susztak K, Reilly MP, Xiao R, Li M. Fan J, et al. Among authors: hu j. PLoS Genet. 2020 May 11;16(5):e1008786. doi: 10.1371/journal.pgen.1008786. eCollection 2020 May. PLoS Genet. 2020. PMID: 32392242 Free PMC article.

4

Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis.

Hu J, Li X, Hu G, Lyu Y, Susztak K, Li M. Hu J, et al. Among authors: hu g. Nat Mach Intell. 2020 Oct;2(10):607-618. doi: 10.1038/s42256-020-00233-7. Epub 2020 Oct 5. Nat Mach Intell. 2020. PMID: 33817554 Free PMC article.

5

Thymic stromal lymphopoietin induces adipose loss through sebum hypersecretion.

Choa R, Tohyama J, Wada S, Meng H, Hu J, Okumura M, May RM, Robertson TF, Pai RL, Nace A, Hopkins C, Jacobsen EA, Haldar M, FitzGerald GA, Behrens EM, Minn AJ, Seale P, Cotsarelis G, Kim B, Seykora JT, Li M, Arany Z, Kambayashi T. Choa R, et al. Among authors: hu j. Science. 2021 Jul 30;373(6554):eabd2893. doi: 10.1126/science.abd2893. Science. 2021. PMID: 34326208 Free PMC article.

6

Implication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling.

Lyu Y, Zauhar R, Dana N, Strang CE, Hu J, Wang K, Liu S, Pan N, Gamlin P, Kimble JA, Messinger JD, Curcio CA, Stambolian D, Li M. Lyu Y, et al. Among authors: hu j. Sci Rep. 2021 Aug 2;11(1):15612. doi: 10.1038/s41598-021-95122-3. Sci Rep. 2021. PMID: 34341398 Free PMC article.

7

Applications of single-cell genomics and computational strategies to study common disease and population-level variation.

Auerbach BJ, Hu J, Reilly MP, Li M. Auerbach BJ, et al. Among authors: hu j. Genome Res. 2021 Oct;31(10):1728-1741. doi: 10.1101/gr.275430.121. Genome Res. 2021. PMID: 34599006 Free PMC article.

8

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network.

Hu J, Li X, Coleman K, Schroeder A, Ma N, Irwin DJ, Lee EB, Shinohara RT, Li M. Hu J, et al. Nat Methods. 2021 Nov;18(11):1342-1351. doi: 10.1038/s41592-021-01255-8. Epub 2021 Oct 28. Nat Methods. 2021. PMID: 34711970

9

As in Real Estate, Location Matters: Cellular Expression of Complement Varies Between Macular and Peripheral Regions of the Retina and Supporting Tissues.

Zauhar R, Biber J, Jabri Y, Kim M, Hu J, Kaplan L, Pfaller AM, Schäfer N, Enzmann V, Schlötzer-Schrehardt U, Straub T, Hauck SM, Gamlin PD, McFerrin MB, Messinger J, Strang CE, Curcio CA, Dana N, Pauly D, Grosche A, Li M, Stambolian D. Zauhar R, et al. Among authors: hu j. Front Immunol. 2022 Jun 15;13:895519. doi: 10.3389/fimmu.2022.895519. eCollection 2022. Front Immunol. 2022. PMID: 35784369 Free PMC article.

10

SpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning.

Coleman K, Hu J, Schroeder A, Lee EB, Li M. Coleman K, et al. Among authors: hu j. Commun Biol. 2023 Apr 7;6(1):378. doi: 10.1038/s42003-023-04761-x. Commun Biol. 2023. PMID: 37029267 Free PMC article.

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