Markram H - Search Results

1

Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations.

Abdellah M, Foni A, Zisis E, Guerrero NR, Lapere S, Coggan JS, Keller D, Markram H, Schürmann F. Abdellah M, et al. Among authors: markram h. Bioinformatics. 2021 Jul 12;37(Suppl_1):i426-i433. doi: 10.1093/bioinformatics/btab280. Bioinformatics. 2021. PMID: 34252950 Free PMC article.

2

Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies.

Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F. Abdellah M, et al. Among authors: markram h. BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):402. doi: 10.1186/s12859-017-1788-4. BMC Bioinformatics. 2017. PMID: 28929974 Free PMC article.

3

NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks.

Abdellah M, Hernando J, Eilemann S, Lapere S, Antille N, Markram H, Schürmann F. Abdellah M, et al. Among authors: markram h. Bioinformatics. 2018 Jul 1;34(13):i574-i582. doi: 10.1093/bioinformatics/bty231. Bioinformatics. 2018. PMID: 29949998 Free PMC article.

4

Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis.

Abdellah M, Guerrero NR, Lapere S, Coggan JS, Keller D, Coste B, Dagar S, Courcol JD, Markram H, Schürmann F. Abdellah M, et al. Among authors: markram h. Bioinformatics. 2020 Jul 1;36(Suppl_1):i534-i541. doi: 10.1093/bioinformatics/btaa461. Bioinformatics. 2020. PMID: 32657395 Free PMC article.

5

Reconstruction and Simulation of Neocortical Microcircuitry.

Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Segev I, Schürmann F. Markram H, et al. Cell. 2015 Oct 8;163(2):456-92. doi: 10.1016/j.cell.2015.09.029. Cell. 2015. PMID: 26451489 Free article.

6

Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation.

Abdellah M, Bilgili A, Eilemann S, Shillcock J, Markram H, Schürmann F. Abdellah M, et al. Among authors: markram h. BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):62. doi: 10.1186/s12859-016-1444-4. BMC Bioinformatics. 2017. PMID: 28251871 Free PMC article.

7

Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate.

Coggan JS, Keller D, Calì C, Lehväslaiho H, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. Among authors: markram h. PLoS Comput Biol. 2018 Aug 30;14(8):e1006392. doi: 10.1371/journal.pcbi.1006392. eCollection 2018 Aug. PLoS Comput Biol. 2018. PMID: 30161133 Free PMC article.

8

A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble.

Coggan JS, Calì C, Keller D, Agus M, Boges D, Abdellah M, Kare K, Lehväslaiho H, Eilemann S, Jolivet RB, Hadwiger M, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. Among authors: markram h. Front Neurosci. 2018 Sep 25;12:664. doi: 10.3389/fnins.2018.00664. eCollection 2018. Front Neurosci. 2018. PMID: 30319342 Free PMC article.

9

Excitation states of metabolic networks predict dose-response fingerprinting and ligand pulse phase signalling.

Coggan JS, Keller D, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. Among authors: markram h. J Theor Biol. 2020 Feb 21;487:110123. doi: 10.1016/j.jtbi.2019.110123. Epub 2019 Dec 19. J Theor Biol. 2020. PMID: 31866398 Free article.

10

Digital Reconstruction of the Neuro-Glia-Vascular Architecture.

Zisis E, Keller D, Kanari L, Arnaudon A, Gevaert M, Delemontex T, Coste B, Foni A, Abdellah M, Calì C, Hess K, Magistretti PJ, Schürmann F, Markram H. Zisis E, et al. Among authors: markram h. Cereb Cortex. 2021 Oct 22;31(12):5686-5703. doi: 10.1093/cercor/bhab254. Cereb Cortex. 2021. PMID: 34387659 Free PMC article.

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