Vaughan TG - Search Results

1

Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.

Hodcroft EB, Zuber M, Nadeau S, Vaughan TG, Crawford KHD, Althaus CL, Reichmuth ML, Bowen JE, Walls AC, Corti D, Bloom JD, Veesler D, Mateo D, Hernando A, Comas I, González-Candelas F; SeqCOVID-SPAIN consortium; Stadler T, Neher RA. Hodcroft EB, et al. Among authors: vaughan tg. Nature. 2021 Jul;595(7869):707-712. doi: 10.1038/s41586-021-03677-y. Epub 2021 Jun 7. Nature. 2021. PMID: 34098568

2

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ. Kühnert D, et al. Among authors: vaughan tg. J R Soc Interface. 2014 Feb 26;11(94):20131106. doi: 10.1098/rsif.2013.1106. Print 2014 May 6. J R Soc Interface. 2014. PMID: 24573331 Free PMC article.

3

Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.

Popinga A, Vaughan T, Stadler T, Drummond AJ. Popinga A, et al. Genetics. 2015 Feb;199(2):595-607. doi: 10.1534/genetics.114.172791. Epub 2014 Dec 19. Genetics. 2015. PMID: 25527289 Free PMC article.

4

How well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?

Stadler T, Vaughan TG, Gavryushkin A, Guindon S, Kühnert D, Leventhal GE, Drummond AJ. Stadler T, et al. Among authors: vaughan tg. Proc Biol Sci. 2015 May 7;282(1806):20150420. doi: 10.1098/rspb.2015.0420. Proc Biol Sci. 2015. PMID: 25876846 Free PMC article.

5

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ. Kühnert D, et al. Among authors: vaughan tg. Mol Biol Evol. 2016 Aug;33(8):2102-16. doi: 10.1093/molbev/msw064. Epub 2016 Apr 9. Mol Biol Evol. 2016. PMID: 27189573 Free PMC article.

6

Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth-death model.

Barido-Sottani J, Vaughan TG, Stadler T. Barido-Sottani J, et al. Among authors: vaughan tg. J R Soc Interface. 2018 Sep;15(146):20180512. doi: 10.1098/rsif.2018.0512. J R Soc Interface. 2018. PMID: 30185544 Free PMC article.

7

Estimating Epidemic Incidence and Prevalence from Genomic Data.

Vaughan TG, Leventhal GE, Rasmussen DA, Drummond AJ, Welch D, Stadler T. Vaughan TG, et al. Mol Biol Evol. 2019 Aug 1;36(8):1804-1816. doi: 10.1093/molbev/msz106. Mol Biol Evol. 2019. PMID: 31058982 Free PMC article.

8

The probability distribution of the reconstructed phylogenetic tree with occurrence data.

Gupta A, Manceau M, Vaughan T, Khammash M, Stadler T. Gupta A, et al. J Theor Biol. 2020 Mar 7;488:110115. doi: 10.1016/j.jtbi.2019.110115. Epub 2019 Dec 19. J Theor Biol. 2020. PMID: 31866392

9

A Multitype Birth-Death Model for Bayesian Inference of Lineage-Specific Birth and Death Rates.

Barido-Sottani J, Vaughan TG, Stadler T. Barido-Sottani J, et al. Among authors: vaughan tg. Syst Biol. 2020 Sep 1;69(5):973-986. doi: 10.1093/sysbio/syaa016. Syst Biol. 2020. PMID: 32105322 Free PMC article.

10

Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses.

Müller NF, Stolz U, Dudas G, Stadler T, Vaughan TG. Müller NF, et al. Among authors: vaughan tg. Proc Natl Acad Sci U S A. 2020 Jul 21;117(29):17104-17111. doi: 10.1073/pnas.1918304117. Epub 2020 Jul 6. Proc Natl Acad Sci U S A. 2020. PMID: 32631984 Free PMC article.

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