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Learned Embeddings from Deep Learning to Visualize and Predict Protein Sets.
Curr Protoc. 2021 May;1(5):e113. doi: 10.1002/cpz1.113.
Curr Protoc. 2021.
PMID: 33961736
Free article.
Embeddings from deep learning transfer GO annotations beyond homology.
Littmann M, Heinzinger M, Dallago C, Olenyi T, Rost B.
Littmann M, et al. Among authors: olenyi t.
Sci Rep. 2021 Jan 13;11(1):1160. doi: 10.1038/s41598-020-80786-0.
Sci Rep. 2021.
PMID: 33441905
Free PMC article.
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PredictProtein - Predicting Protein Structure and Function for 29 Years.
Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, O'Donoghue S, Sander C, Schafferhans A, Schlessinger A, Vriend G, Mirdita M, Gawron P, Gu W, Jarosz Y, Trefois C, Steinegger M, Schneider R, Rost B.
Bernhofer M, et al. Among authors: olenyi t.
Nucleic Acids Res. 2021 Jul 2;49(W1):W535-W540. doi: 10.1093/nar/gkab354.
Nucleic Acids Res. 2021.
PMID: 33999203
Free PMC article.
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Embeddings from protein language models predict conservation and variant effects.
Marquet C, Heinzinger M, Olenyi T, Dallago C, Erckert K, Bernhofer M, Nechaev D, Rost B.
Marquet C, et al. Among authors: olenyi t.
Hum Genet. 2022 Oct;141(10):1629-1647. doi: 10.1007/s00439-021-02411-y. Epub 2021 Dec 30.
Hum Genet. 2022.
PMID: 34967936
Free PMC article.
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Critical assessment of missense variant effect predictors on disease-relevant variant data.
Rastogi R, Chung R, Li S, Li C, Lee K, Woo J, Kim DW, Keum C, Babbi G, Martelli PL, Savojardo C, Casadio R, Chennen K, Weber T, Poch O, Ancien F, Cia G, Pucci F, Raimondi D, Vranken W, Rooman M, Marquet C, Olenyi T, Rost B, Andreoletti G, Kamandula A, Peng Y, Bakolitsa C, Mort M, Cooper DN, Bergquist T, Pejaver V, Liu X, Radivojac P, Brenner SE, Ioannidis NM.
Rastogi R, et al. Among authors: olenyi t.
bioRxiv [Preprint]. 2024 Jun 8:2024.06.06.597828. doi: 10.1101/2024.06.06.597828.
bioRxiv. 2024.
PMID: 38895200
Free PMC article.
Preprint.
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LambdaPP: Fast and accessible protein-specific phenotype predictions.
Olenyi T, Marquet C, Heinzinger M, Kröger B, Nikolova T, Bernhofer M, Sändig P, Schütze K, Littmann M, Mirdita M, Steinegger M, Dallago C, Rost B.
Olenyi T, et al.
Protein Sci. 2023 Jan;32(1):e4524. doi: 10.1002/pro.4524.
Protein Sci. 2023.
PMID: 36454227
Free PMC article.
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