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Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens.
Wang MX, Lou EG, Sapoval N, Kim E, Kalvapalle P, Kille B, Elworth RAL, Liu Y, Fu Y, Stadler LB, Treangen TJ. Wang MX, et al. Among authors: sapoval n. bioRxiv [Preprint]. 2023 Sep 30:2023.02.11.528155. doi: 10.1101/2023.02.11.528155. bioRxiv. 2023. Update in: Nat Commun. 2024 Jul 26;15(1):6306. doi: 10.1038/s41467-024-49957-9 PMID: 36824759 Free PMC article. Updated. Preprint.
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
Walker K, Kalra D, Lowdon R, Chen G, Molik D, Soto DC, Dabbaghie F, Khleifat AA, Mahmoud M, Paulin LF, Raza MS, Pfeifer SP, Agustinho DP, Aliyev E, Avdeyev P, Barrozo ER, Behera S, Billingsley K, Chong LC, Choubey D, De Coster W, Fu Y, Gener AR, Hefferon T, Henke DM, Höps W, Illarionova A, Jochum MD, Jose M, Kesharwani RK, Kolora SRR, Kubica J, Lakra P, Lattimer D, Liew CS, Lo BW, Lo C, Lötter A, Majidian S, Mendem SK, Mondal R, Ohmiya H, Parvin N, Peralta C, Poon CL, Prabhakaran R, Saitou M, Sammi A, Sanio P, Sapoval N, Syed N, Treangen T, Wang G, Xu T, Yang J, Zhang S, Zhou W, Sedlazeck FJ, Busby B. Walker K, et al. Among authors: sapoval n. F1000Res. 2022 May 16;11:530. doi: 10.12688/f1000research.110194.1. eCollection 2022. F1000Res. 2022. PMID: 36262335 Free PMC article.
KOMB: K-core based de novo characterization of copy number variation in microbiomes.
Balaji A, Sapoval N, Seto C, Leo Elworth RA, Fu Y, Nute MG, Savidge T, Segarra S, Treangen TJ. Balaji A, et al. Among authors: sapoval n. Comput Struct Biotechnol J. 2022 Jun 17;20:3208-3222. doi: 10.1016/j.csbj.2022.06.019. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35832621 Free PMC article.
22 results