Kuipers J - Search Results

1

Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma.

Moore AL, Batavia AA, Kuipers J, Singer J, Burcklen E, Schraml P, Beisel C, Moch H, Beerenwinkel N. Moore AL, et al. Among authors: kuipers j. Cancers (Basel). 2021 Apr 30;13(9):2163. doi: 10.3390/cancers13092163. Cancers (Basel). 2021. PMID: 33946379 Free PMC article.

2

Tree inference for single-cell data.

Jahn K, Kuipers J, Beerenwinkel N. Jahn K, et al. Among authors: kuipers j. Genome Biol. 2016 May 5;17:86. doi: 10.1186/s13059-016-0936-x. Genome Biol. 2016. PMID: 27149953 Free PMC article.

3

Large-scale inference of conjunctive Bayesian networks.

Montazeri H, Kuipers J, Kouyos R, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Beerenwinkel N; Swiss HIV Cohort Study. Montazeri H, et al. Among authors: kuipers j. Bioinformatics. 2016 Sep 1;32(17):i727-i735. doi: 10.1093/bioinformatics/btw459. Bioinformatics. 2016. PMID: 27587695

4

pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Progression Dynamics.

Cristea S, Kuipers J, Beerenwinkel N. Cristea S, et al. Among authors: kuipers j. J Comput Biol. 2017 Jun;24(6):603-615. doi: 10.1089/cmb.2016.0171. Epub 2016 Dec 12. J Comput Biol. 2017. PMID: 27936934

5

Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.

Hofmann AL, Behr J, Singer J, Kuipers J, Beisel C, Schraml P, Moch H, Beerenwinkel N. Hofmann AL, et al. Among authors: kuipers j. BMC Bioinformatics. 2017 Jan 3;18(1):8. doi: 10.1186/s12859-016-1417-7. BMC Bioinformatics. 2017. PMID: 28049408 Free PMC article.

6

Advances in understanding tumour evolution through single-cell sequencing.

Kuipers J, Jahn K, Beerenwinkel N. Kuipers J, et al. Biochim Biophys Acta Rev Cancer. 2017 Apr;1867(2):127-138. doi: 10.1016/j.bbcan.2017.02.001. Epub 2017 Feb 11. Biochim Biophys Acta Rev Cancer. 2017. PMID: 28193548 Free PMC article. Review.

7

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors.

Kuipers J, Jahn K, Raphael BJ, Beerenwinkel N. Kuipers J, et al. Genome Res. 2017 Nov;27(11):1885-1894. doi: 10.1101/gr.220707.117. Epub 2017 Oct 13. Genome Res. 2017. PMID: 29030470 Free PMC article.

8

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects.

Srivatsa S, Kuipers J, Schmich F, Eicher S, Emmenlauer M, Dehio C, Beerenwinkel N. Srivatsa S, et al. Among authors: kuipers j. Bioinformatics. 2018 Jul 1;34(13):i519-i527. doi: 10.1093/bioinformatics/bty240. Bioinformatics. 2018. PMID: 29950000 Free PMC article.

9

Mutational interactions define novel cancer subgroups.

Kuipers J, Thurnherr T, Moffa G, Suter P, Behr J, Goosen R, Christofori G, Beerenwinkel N. Kuipers J, et al. Nat Commun. 2018 Oct 19;9(1):4353. doi: 10.1038/s41467-018-06867-x. Nat Commun. 2018. PMID: 30341300 Free PMC article.

10

Single-cell mutation identification via phylogenetic inference.

Singer J, Kuipers J, Jahn K, Beerenwinkel N. Singer J, et al. Among authors: kuipers j. Nat Commun. 2018 Dec 4;9(1):5144. doi: 10.1038/s41467-018-07627-7. Nat Commun. 2018. PMID: 30514897 Free PMC article.

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