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Page 1
Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand.
Geoghegan JL, Douglas J, Ren X, Storey M, Hadfield J, Silander OK, Freed NE, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Sporle A, Baker MG, Murdoch DR, Drummond AJ, Welch D, Simpson CR, French N, Holmes EC, de Ligt J. Geoghegan JL, et al. Among authors: welch d. Emerg Infect Dis. 2021 May;27(5):1317-1322. doi: 10.3201/eid2705.204579. Emerg Infect Dis. 2021. PMID: 33900175 Free PMC article.
Recursive algorithms for phylogenetic tree counting.
Gavryushkina A, Welch D, Drummond AJ. Gavryushkina A, et al. Among authors: welch d. Algorithms Mol Biol. 2013 Oct 28;8(1):26. doi: 10.1186/1748-7188-8-26. Algorithms Mol Biol. 2013. PMID: 24164709 Free PMC article.
Inferring Ancestral Recombination Graphs from Bacterial Genomic Data.
Vaughan TG, Welch D, Drummond AJ, Biggs PJ, George T, French NP. Vaughan TG, et al. Among authors: welch d. Genetics. 2017 Feb;205(2):857-870. doi: 10.1534/genetics.116.193425. Epub 2016 Dec 22. Genetics. 2017. PMID: 28007885 Free PMC article.
Estimating Epidemic Incidence and Prevalence from Genomic Data.
Vaughan TG, Leventhal GE, Rasmussen DA, Drummond AJ, Welch D, Stadler T. Vaughan TG, et al. Among authors: welch d. Mol Biol Evol. 2019 Aug 1;36(8):1804-1816. doi: 10.1093/molbev/msz106. Mol Biol Evol. 2019. PMID: 31058982 Free PMC article.
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Among authors: welch d. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing.
Swadi T, Geoghegan JL, Devine T, McElnay C, Sherwood J, Shoemack P, Ren X, Storey M, Jefferies S, Smit E, Hadfield J, Kenny A, Jelley L, Sporle A, McNeill A, Reynolds GE, Mouldey K, Lowe L, Sonder G, Drummond AJ, Huang S, Welch D, Holmes EC, French N, Simpson CR, de Ligt J. Swadi T, et al. Among authors: welch d. Emerg Infect Dis. 2021 Mar;27(3):687-693. doi: 10.3201/eid2703.204714. Epub 2021 Jan 5. Emerg Infect Dis. 2021. PMID: 33400642 Free PMC article. Review.
COVID-19 vaccine strategies for Aotearoa New Zealand: a mathematical modelling study.
Nguyen T, Adnan M, Nguyen BP, de Ligt J, Geoghegan JL, Dean R, Jefferies S, Baker MG, Seah WK, Sporle AA, French NP, Murdoch DR, Welch D, Simpson CR. Nguyen T, et al. Among authors: welch d. Lancet Reg Health West Pac. 2021 Oct;15:100256. doi: 10.1016/j.lanwpc.2021.100256. Epub 2021 Aug 19. Lancet Reg Health West Pac. 2021. PMID: 34426804 Free PMC article.
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations.
Douglas J, Mendes FK, Bouckaert R, Xie D, Jiménez-Silva CL, Swanepoel C, de Ligt J, Ren X, Storey M, Hadfield J, Simpson CR, Geoghegan JL, Drummond AJ, Welch D. Douglas J, et al. Among authors: welch d. Virus Evol. 2021 Jun 8;7(2):veab052. doi: 10.1093/ve/veab052. eCollection 2021. Virus Evol. 2021. PMID: 34527282 Free PMC article.
786 results