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Genome-wide enhancer maps link risk variants to disease genes.
Nasser J, Bergman DT, Fulco CP, Guckelberger P, Doughty BR, Patwardhan TA, Jones TR, Nguyen TH, Ulirsch JC, Lekschas F, Mualim K, Natri HM, Weeks EM, Munson G, Kane M, Kang HY, Cui A, Ray JP, Eisenhaure TM, Collins RL, Dey K, Pfister H, Price AL, Epstein CB, Kundaje A, Xavier RJ, Daly MJ, Huang H, Finucane HK, Hacohen N, Lander ES, Engreitz JM. Nasser J, et al. Among authors: pfister h. Nature. 2021 May;593(7858):238-243. doi: 10.1038/s41586-021-03446-x. Epub 2021 Apr 7. Nature. 2021. PMID: 33828297 Free PMC article.
Guided visual exploration of genomic stratifications in cancer.
Streit M, Lex A, Gratzl S, Partl C, Schmalstieg D, Pfister H, Park PJ, Gehlenborg N. Streit M, et al. Among authors: pfister h. Nat Methods. 2014 Sep;11(9):884-885. doi: 10.1038/nmeth.3088. Nat Methods. 2014. PMID: 25166867 Free PMC article. No abstract available.
HiGlass: web-based visual exploration and analysis of genome interaction maps.
Kerpedjiev P, Abdennur N, Lekschas F, McCallum C, Dinkla K, Strobelt H, Luber JM, Ouellette SB, Azhir A, Kumar N, Hwang J, Lee S, Alver BH, Pfister H, Mirny LA, Park PJ, Gehlenborg N. Kerpedjiev P, et al. Among authors: pfister h. Genome Biol. 2018 Aug 24;19(1):125. doi: 10.1186/s13059-018-1486-1. Genome Biol. 2018. PMID: 30143029 Free PMC article.
Visual Pattern-Driven Exploration of Big Data.
Behrisch M, Schreck T, Krüger R, Gehlenborg N, Lekschas F, Pfister H. Behrisch M, et al. Among authors: pfister h. 2018 Int Symp Big Data Vis Immers Analyt (BDVA) (2018). 2018 Oct;2018:10.1109/BDVA.2018.8534028. doi: 10.1109/BDVA.2018.8534028. Epub 2018 Nov 15. 2018 Int Symp Big Data Vis Immers Analyt (BDVA) (2018). 2018. PMID: 31396383 Free PMC article.
MITI minimum information guidelines for highly multiplexed tissue images.
Schapiro D, Yapp C, Sokolov A, Reynolds SM, Chen YA, Sudar D, Xie Y, Muhlich J, Arias-Camison R, Arena S, Taylor AJ, Nikolov M, Tyler M, Lin JR, Burlingame EA; Human Tumor Atlas Network; Chang YH, Farhi SL, Thorsson V, Venkatamohan N, Drewes JL, Pe'er D, Gutman DA, Herrmann MD, Gehlenborg N, Bankhead P, Roland JT, Herndon JM, Snyder MP, Angelo M, Nolan G, Swedlow JR, Schultz N, Merrick DT, Mazzili SA, Cerami E, Rodig SJ, Santagata S, Sorger PK. Schapiro D, et al. Nat Methods. 2022 Mar;19(3):262-267. doi: 10.1038/s41592-022-01415-4. Nat Methods. 2022. PMID: 35277708 Free PMC article.
The big data challenges of connectomics.
Lichtman JW, Pfister H, Shavit N. Lichtman JW, et al. Among authors: pfister h. Nat Neurosci. 2014 Nov;17(11):1448-54. doi: 10.1038/nn.3837. Epub 2014 Oct 28. Nat Neurosci. 2014. PMID: 25349911 Free PMC article. Review.
915 results