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Gene trajectory inference for single-cell data by optimal transport metrics.
Qu R, Cheng X, Sefik E, Stanley Iii JS, Landa B, Strino F, Platt S, Garritano J, Odell ID, Coifman R, Flavell RA, Myung P, Kluger Y. Qu R, et al. Among authors: coifman r. Nat Biotechnol. 2024 Apr 5:10.1038/s41587-024-02186-3. doi: 10.1038/s41587-024-02186-3. Online ahead of print. Nat Biotechnol. 2024. PMID: 38580861
Local conformal autoencoder for standardized data coordinates.
Peterfreund E, Lindenbaum O, Dietrich F, Bertalan T, Gavish M, Kevrekidis IG, Coifman RR. Peterfreund E, et al. Among authors: coifman rr. Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):30918-30927. doi: 10.1073/pnas.2014627117. Epub 2020 Nov 23. Proc Natl Acad Sci U S A. 2020. PMID: 33229581 Free PMC article.
Two-sample statistics based on anisotropic kernels.
Cheng X, Cloninger A, Coifman RR. Cheng X, et al. Among authors: coifman rr. Inf inference. 2020 Sep;9(3):677-719. doi: 10.1093/imaiai/iaz018. Epub 2019 Dec 10. Inf inference. 2020. PMID: 32929389 Free PMC article.
64 results