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Benchmarking of numerical integration methods for ODE models of biological systems.
Sci Rep. 2021 Jan 29;11(1):2696. doi: 10.1038/s41598-021-82196-2.
Sci Rep. 2021.
PMID: 33514831
Free PMC article.
PEtab-Interoperable specification of parameter estimation problems in systems biology.
Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, Raimúndez E, Refisch L, Rosenblatt M, Stapor PL, Städter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D.
Schmiester L, et al. Among authors: stadter p.
PLoS Comput Biol. 2021 Jan 26;17(1):e1008646. doi: 10.1371/journal.pcbi.1008646. eCollection 2021 Jan.
PLoS Comput Biol. 2021.
PMID: 33497393
Free PMC article.
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pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.
Schälte Y, Fröhlich F, Jost PJ, Vanhoefer J, Pathirana D, Stapor P, Lakrisenko P, Wang D, Raimúndez E, Merkt S, Schmiester L, Städter P, Grein S, Dudkin E, Doresic D, Weindl D, Hasenauer J.
Schälte Y, et al. Among authors: stadter p.
Bioinformatics. 2023 Nov 1;39(11):btad711. doi: 10.1093/bioinformatics/btad711.
Bioinformatics. 2023.
PMID: 37995297
Free PMC article.
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