Cui Y - Search Results

1

Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems.

Alon S, Goodwin DR, Sinha A, Wassie AT, Chen F, Daugharthy ER, Bando Y, Kajita A, Xue AG, Marrett K, Prior R, Cui Y, Payne AC, Yao CC, Suk HJ, Wang R, Yu CJ, Tillberg P, Reginato P, Pak N, Liu S, Punthambaker S, Iyer EPR, Kohman RE, Miller JA, Lein ES, Lako A, Cullen N, Rodig S, Helvie K, Abravanel DL, Wagle N, Johnson BE, Klughammer J, Slyper M, Waldman J, Jané-Valbuena J, Rozenblatt-Rosen O, Regev A; IMAXT Consortium; Church GM, Marblestone AH, Boyden ES. Alon S, et al. Among authors: cui y. Science. 2021 Jan 29;371(6528):eaax2656. doi: 10.1126/science.aax2656. Science. 2021. PMID: 33509999 Free PMC article.

2

Clonal fitness inferred from time-series modelling of single-cell cancer genomes.

Salehi S, Kabeer F, Ceglia N, Andronescu M, Williams MJ, Campbell KR, Masud T, Wang B, Biele J, Brimhall J, Gee D, Lee H, Ting J, Zhang AW, Tran H, O'Flanagan C, Dorri F, Rusk N, de Algara TR, Lee SR, Cheng BYC, Eirew P, Kono T, Pham J, Grewal D, Lai D, Moore R, Mungall AJ, Marra MA; IMAXT Consortium; McPherson A, Bouchard-Côté A, Aparicio S, Shah SP. Salehi S, et al. Nature. 2021 Jul;595(7868):585-590. doi: 10.1038/s41586-021-03648-3. Epub 2021 Jun 23. Nature. 2021. PMID: 34163070 Free PMC article.

3

Expansion microscopy using a single anchor molecule for high-yield multiplexed imaging of proteins and RNAs.

Cui Y, Yang G, Goodwin DR, O'Flanagan CH, Sinha A, Zhang C, Kitko KE, Shin TW, Park D, Aparicio S; CRUK IMAXT Grand Challenge Consortium; Boyden ES. Cui Y, et al. PLoS One. 2023 Sep 20;18(9):e0291506. doi: 10.1371/journal.pone.0291506. eCollection 2023. PLoS One. 2023. PMID: 37729182 Free PMC article.

4

Beyond quantification: in situ analysis of transcriptome and pre-mRNA alternative splicing at the nanoscale.

Cui Y, Liu J, Irudayaraj J. Cui Y, et al. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2017 Jul;9(4). doi: 10.1002/wnan.1443. Epub 2016 Nov 4. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2017. PMID: 27813271 Review.

5

Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Cui Y, Hu D, Markillie LM, Chrisler WB, Gaffrey MJ, Ansong C, Sussel L, Orr G. Cui Y, et al. Nucleic Acids Res. 2018 Jan 25;46(2):e7. doi: 10.1093/nar/gkx874. Nucleic Acids Res. 2018. PMID: 29040675 Free PMC article.

6

Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single-Cell Evaluation.

Cui Y, Wang X, Ren W, Liu J, Irudayaraj J. Cui Y, et al. ACS Nano. 2016 Mar 22;10(3):3132-43. doi: 10.1021/acsnano.6b00142. Epub 2016 Feb 24. ACS Nano. 2016. PMID: 26895095 Free PMC article.

7

Quantitative Mapping of Oxidative Stress Response to Lithium Cobalt Oxide Nanoparticles in Single Cells Using Multiplexed in Situ Gene Expression Analysis.

Cui Y, Melby ES, Mensch AC, Laudadio ED, Hang MN, Dohnalkova A, Hu D, Hamers RJ, Orr G. Cui Y, et al. Nano Lett. 2019 Mar 13;19(3):1990-1997. doi: 10.1021/acs.nanolett.8b05172. Epub 2019 Feb 21. Nano Lett. 2019. PMID: 30773885

8

Counting mRNA Copies in Intact Bacterial Cells by Fluctuation Localization Imaging-Based Fluorescence In Situ Hybridization (fliFISH).

Hu D, Cui Y, Markillie LM, Chrisler WB, Wang Q, Hatzenpichler R, Orr G. Hu D, et al. Among authors: cui y. Methods Mol Biol. 2021;2246:237-247. doi: 10.1007/978-1-0716-1115-9_15. Methods Mol Biol. 2021. PMID: 33576993

9

The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function.

Singer RA, Arnes L, Cui Y, Wang J, Gao Y, Guney MA, Burnum-Johnson KE, Rabadan R, Ansong C, Orr G, Sussel L. Singer RA, et al. Among authors: cui y. Cell Metab. 2019 Dec 3;30(6):1091-1106.e8. doi: 10.1016/j.cmet.2019.09.013. Epub 2019 Oct 10. Cell Metab. 2019. PMID: 31607563 Free PMC article.

10

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer.

Liu W, Cui Y, Ren W, Irudayaraj J. Liu W, et al. Among authors: cui y. Clin Epigenetics. 2019 Jan 30;11(1):16. doi: 10.1186/s13148-019-0620-6. Clin Epigenetics. 2019. PMID: 30700309 Free PMC article.

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