Watson S - Search Results

1

A computational method for immune repertoire mining that identifies novel binders from different clonotypes, demonstrated by identifying anti-pertussis toxoid antibodies.

Richardson E, Galson JD, Kellam P, Kelly DF, Smith SE, Palser A, Watson S, Deane CM. Richardson E, et al. Among authors: watson s. MAbs. 2021 Jan-Dec;13(1):1869406. doi: 10.1080/19420862.2020.1869406. MAbs. 2021. PMID: 33427589 Free PMC article.

2

Patient-specific simulation as a basis for clinical decision-making.

Sadiq SK, Mazzeo MD, Zasada SJ, Manos S, Stoica I, Gale CV, Watson SJ, Kellam P, Brew S, Coveney PV. Sadiq SK, et al. Among authors: watson sj. Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3199-219. doi: 10.1098/rsta.2008.0100. Philos Trans A Math Phys Eng Sci. 2008. PMID: 18573758

3

Evolutionary dynamics of local pandemic H1N1/2009 influenza virus lineages revealed by whole-genome analysis.

Baillie GJ, Galiano M, Agapow PM, Myers R, Chiam R, Gall A, Palser AL, Watson SJ, Hedge J, Underwood A, Platt S, McLean E, Pebody RG, Rambaut A, Green J, Daniels R, Pybus OG, Kellam P, Zambon M. Baillie GJ, et al. Among authors: watson sj. J Virol. 2012 Jan;86(1):11-8. doi: 10.1128/JVI.05347-11. Epub 2011 Oct 19. J Virol. 2012. PMID: 22013031 Free PMC article.

4

Specific capture and whole-genome sequencing of viruses from clinical samples.

Depledge DP, Palser AL, Watson SJ, Lai IY, Gray ER, Grant P, Kanda RK, Leproust E, Kellam P, Breuer J. Depledge DP, et al. PLoS One. 2011;6(11):e27805. doi: 10.1371/journal.pone.0027805. Epub 2011 Nov 18. PLoS One. 2011. PMID: 22125625 Free PMC article.

5

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL. Archer J, et al. BMC Bioinformatics. 2012 Mar 23;13:47. doi: 10.1186/1471-2105-13-47. BMC Bioinformatics. 2012. PMID: 22443413 Free PMC article.

6

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.

Gall A, Ferns B, Morris C, Watson S, Cotten M, Robinson M, Berry N, Pillay D, Kellam P. Gall A, et al. Among authors: watson s. J Clin Microbiol. 2012 Dec;50(12):3838-44. doi: 10.1128/JCM.01516-12. Epub 2012 Sep 19. J Clin Microbiol. 2012. PMID: 22993180 Free PMC article.

7

Viral population analysis and minority-variant detection using short read next-generation sequencing.

Watson SJ, Welkers MR, Depledge DP, Coulter E, Breuer JM, de Jong MD, Kellam P. Watson SJ, et al. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120205. doi: 10.1098/rstb.2012.0205. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382427 Free PMC article.

8

Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus.

Cotten M, Lam TT, Watson SJ, Palser AL, Petrova V, Grant P, Pybus OG, Rambaut A, Guan Y, Pillay D, Kellam P, Nastouli E. Cotten M, et al. Emerg Infect Dis. 2013 May;19(5):736-42B. doi: 10.3201/eid1905.130057. Emerg Infect Dis. 2013. PMID: 23693015 Free PMC article.

9

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study.

Cotten M, Watson SJ, Kellam P, Al-Rabeeah AA, Makhdoom HQ, Assiri A, Al-Tawfiq JA, Alhakeem RF, Madani H, AlRabiah FA, Al Hajjar S, Al-nassir WN, Albarrak A, Flemban H, Balkhy HH, Alsubaie S, Palser AL, Gall A, Bashford-Rogers R, Rambaut A, Zumla AI, Memish ZA. Cotten M, et al. Among authors: watson sj. Lancet. 2013 Dec 14;382(9909):1993-2002. doi: 10.1016/S0140-6736(13)61887-5. Epub 2013 Sep 20. Lancet. 2013. PMID: 24055451 Free PMC article.

10

Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm.

Cotten M, Oude Munnink B, Canuti M, Deijs M, Watson SJ, Kellam P, van der Hoek L. Cotten M, et al. PLoS One. 2014 Apr 2;9(4):e93269. doi: 10.1371/journal.pone.0093269. eCollection 2014. PLoS One. 2014. PMID: 24695106 Free PMC article.

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