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Convergent network effects along the axis of gene expression during prostate cancer progression.
Charmpi K, Guo T, Zhong Q, Wagner U, Sun R, Toussaint NC, Fritz CE, Yuan C, Chen H, Rupp NJ, Christiansen A, Rutishauser D, Rüschoff JH, Fankhauser C, Saba K, Poyet C, Hermanns T, Oehl K, Moore AL, Beisel C, Calzone L, Martignetti L, Zhang Q, Zhu Y, Martínez MR, Manica M, Haffner MC, Aebersold R, Wild PJ, Beyer A. Charmpi K, et al. Among authors: martinez mr. Genome Biol. 2020 Dec 14;21(1):302. doi: 10.1186/s13059-020-02188-9. Genome Biol. 2020. PMID: 33317623 Free PMC article.
Inferring clonal composition from multiple tumor biopsies.
Manica M, Kim HR, Mathis R, Chouvarine P, Rutishauser D, De Vargas Roditi L, Szalai B, Wagner U, Oehl K, Saba K, Pati A, Saez-Rodriguez J, Roy A, Parsons DW, Wild PJ, Martínez MR, Sumazin P. Manica M, et al. Among authors: martinez mr. NPJ Syst Biol Appl. 2020 Aug 25;6(1):27. doi: 10.1038/s41540-020-00147-5. NPJ Syst Biol Appl. 2020. PMID: 32843649 Free PMC article.
FPGA Accelerated Analysis of Boolean Gene Regulatory Networks.
Manica M, Polig R, Purandare M, Mathis R, Hagleitner C, Martinez MR. Manica M, et al. Among authors: martinez mr. IEEE/ACM Trans Comput Biol Bioinform. 2020 Nov-Dec;17(6):2141-2147. doi: 10.1109/TCBB.2019.2936836. Epub 2020 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2020. PMID: 31494553
The number of titrated microRNA species dictates ceRNA regulation.
Chiu HS, Martínez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Yang X, Sumazin P, Califano A. Chiu HS, et al. Among authors: martinez mr. Nucleic Acids Res. 2018 May 18;46(9):4354-4369. doi: 10.1093/nar/gky286. Nucleic Acids Res. 2018. PMID: 29684207 Free PMC article.
High-throughput validation of ceRNA regulatory networks.
Chiu HS, Martínez MR, Bansal M, Subramanian A, Golub TR, Yang X, Sumazin P, Califano A. Chiu HS, et al. Among authors: martinez mr. BMC Genomics. 2017 May 30;18(1):418. doi: 10.1186/s12864-017-3790-7. BMC Genomics. 2017. PMID: 28558729 Free PMC article.
96 results