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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.
Abugessaisa I, Ramilowski JA, Lizio M, Severin J, Hasegawa A, Harshbarger J, Kondo A, Noguchi S, Yip CW, Ooi JLC, Tagami M, Hori F, Agrawal S, Hon CC, Cardon M, Ikeda S, Ono H, Bono H, Kato M, Hashimoto K, Bonetti A, Kato M, Kobayashi N, Shin J, de Hoon M, Hayashizaki Y, Carninci P, Kawaji H, Kasukawa T. Abugessaisa I, et al. Among authors: kawaji h. Nucleic Acids Res. 2021 Jan 8;49(D1):D892-D898. doi: 10.1093/nar/gkaa1054. Nucleic Acids Res. 2021. PMID: 33211864 Free PMC article.
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T, Fukuda S, Sasaki D, Podhajska A, Harbers M, Kawai J, Carninci P, Hayashizaki Y. Shiraki T, et al. Among authors: kawaji h. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15776-81. doi: 10.1073/pnas.2136655100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663149 Free PMC article.
Alternate transcription of the Toll-like receptor signaling cascade.
Wells CA, Chalk AM, Forrest A, Taylor D, Waddell N, Schroder K, Himes SR, Faulkner G, Lo S, Kasukawa T, Kawaji H, Kai C, Kawai J, Katayama S, Carninci P, Hayashizaki Y, Hume DA, Grimmond SM. Wells CA, et al. Among authors: kawaji h. Genome Biol. 2006;7(2):R10. doi: 10.1186/gb-2006-7-2-r10. Epub 2006 Feb 17. Genome Biol. 2006. PMID: 16507160 Free PMC article.
Genome-wide analysis of mammalian promoter architecture and evolution.
Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engström PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, Ravasi T, Kasukawa T, Fukuda S, Kanamori-Katayama M, Kitazume Y, Kawaji H, Kai C, Nakamura M, Konno H, Nakano K, Mottagui-Tabar S, Arner P, Chesi A, Gustincich S, Persichetti F, Suzuki H, Grimmond SM, Wells CA, Orlando V, Wahlestedt C, Liu ET, Harbers M, Kawai J, Bajic VB, Hume DA, Hayashizaki Y. Carninci P, et al. Among authors: kawaji h. Nat Genet. 2006 Jun;38(6):626-35. doi: 10.1038/ng1789. Epub 2006 Apr 28. Nat Genet. 2006. PMID: 16645617
Pseudo-messenger RNA: phantoms of the transcriptome.
Frith MC, Wilming LG, Forrest A, Kawaji H, Tan SL, Wahlestedt C, Bajic VB, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bailey TL, Huminiecki L. Frith MC, et al. Among authors: kawaji h. PLoS Genet. 2006 Apr;2(4):e23. doi: 10.1371/journal.pgen.0020023. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683022 Free PMC article.
Exploration of small RNAs.
Kawaji H, Hayashizaki Y. Kawaji H, et al. PLoS Genet. 2008 Jan;4(1):e22. doi: 10.1371/journal.pgen.0040022. PLoS Genet. 2008. PMID: 18225959 Free PMC article. Review.
259 results