Cerulo L - Search Results

1

Transcriptional regulatory networks of tumor-associated macrophages that drive malignancy in mesenchymal glioblastoma.

Sa JK, Chang N, Lee HW, Cho HJ, Ceccarelli M, Cerulo L, Yin J, Kim SS, Caruso FP, Lee M, Kim D, Oh YT, Lee Y, Her NG, Min B, Kim HJ, Jeong DE, Kim HM, Kim H, Chung S, Woo HG, Lee J, Kong DS, Seol HJ, Lee JI, Kim J, Park WY, Wang Q, Sulman EP, Heimberger AB, Lim M, Park JB, Iavarone A, Verhaak RGW, Nam DH. Sa JK, et al. Among authors: cerulo l. Genome Biol. 2020 Aug 26;21(1):216. doi: 10.1186/s13059-020-02140-x. Genome Biol. 2020. PMID: 32847614 Free PMC article.

2

Learning gene regulatory networks from only positive and unlabeled data.

Cerulo L, Elkan C, Ceccarelli M. Cerulo L, et al. BMC Bioinformatics. 2010 May 5;11:228. doi: 10.1186/1471-2105-11-228. BMC Bioinformatics. 2010. PMID: 20444264 Free PMC article.

3

VEGA: variational segmentation for copy number detection.

Morganella S, Cerulo L, Viglietto G, Ceccarelli M. Morganella S, et al. Among authors: cerulo l. Bioinformatics. 2010 Dec 15;26(24):3020-7. doi: 10.1093/bioinformatics/btq586. Epub 2010 Oct 19. Bioinformatics. 2010. PMID: 20959380

4

A negative selection heuristic to predict new transcriptional targets.

Cerulo L, Paduano V, Zoppoli P, Ceccarelli M. Cerulo L, et al. BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2105-14-S1-S3. Epub 2013 Jan 14. BMC Bioinformatics. 2013. PMID: 23368951 Free PMC article.

5

Ensemble of gene signatures identifies novel biomarkers in colorectal cancer activated through PPARγ and TNFα signaling.

Pagnotta SM, Laudanna C, Pancione M, Sabatino L, Votino C, Remo A, Cerulo L, Zoppoli P, Manfrin E, Colantuoni V, Ceccarelli M. Pagnotta SM, et al. Among authors: cerulo l. PLoS One. 2013 Aug 19;8(8):e72638. doi: 10.1371/journal.pone.0072638. eCollection 2013. PLoS One. 2013. PMID: 24133572 Free PMC article.

6

Identification of a novel gene signature of ES cells self-renewal fluctuation through system-wide analysis.

Cerulo L, Tagliaferri D, Marotta P, Zoppoli P, Russo F, Mazio C, DeFelice M, Ceccarelli M, Falco G. Cerulo L, et al. PLoS One. 2014 Jan 2;9(1):e83235. doi: 10.1371/journal.pone.0083235. eCollection 2014. PLoS One. 2014. PMID: 24392082 Free PMC article.

7

De novo reconstruction of gene regulatory networks from time series data, an approach based on formal methods.

Ceccarelli M, Cerulo L, Santone A. Ceccarelli M, et al. Among authors: cerulo l. Methods. 2014 Oct 1;69(3):298-305. doi: 10.1016/j.ymeth.2014.06.005. Epub 2014 Jun 21. Methods. 2014. PMID: 24960286

8

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer.

Remo A, Simeone I, Pancione M, Parcesepe P, Finetti P, Cerulo L, Bensmail H, Birnbaum D, Van Laere SJ, Colantuoni V, Bonetti F, Bertucci F, Manfrin E, Ceccarelli M. Remo A, et al. Among authors: cerulo l. J Transl Med. 2015 May 1;13:138. doi: 10.1186/s12967-015-0492-2. J Transl Med. 2015. PMID: 25928084 Free PMC article.

9

Detection of statistically significant network changes in complex biological networks.

Mall R, Cerulo L, Bensmail H, Iavarone A, Ceccarelli M. Mall R, et al. Among authors: cerulo l. BMC Syst Biol. 2017 Mar 4;11(1):32. doi: 10.1186/s12918-017-0412-6. BMC Syst Biol. 2017. PMID: 28259158 Free PMC article.

10

Identification of long non-coding transcripts with feature selection: a comparative study.

Ventola GM, Noviello TM, D'Aniello S, Spagnuolo A, Ceccarelli M, Cerulo L. Ventola GM, et al. Among authors: cerulo l. BMC Bioinformatics. 2017 Mar 23;18(1):187. doi: 10.1186/s12859-017-1594-z. BMC Bioinformatics. 2017. PMID: 28335739 Free PMC article.

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